Expression of 1-1-1.2.13.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.50810.018
27DAP/17DAP1.543220.437
39DAP/27DAP1.014951
41DAP/39DAP1.215730.701
42DAP/41DAP1.03161
43DAP/42DAP1.02010.937
47DAP/43DAP1.23260.198
52DAP/47DAP1.853060.294
57DAP/52DAP0.918420.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925210.336
17DAP/reference0.796680.053
27DAP/reference1.100470.52
39DAP/reference0.777230.054
41DAP/reference0.647970.031
42DAP/reference1.060960.523
43DAP/reference0.999460.942
47DAP/reference1.003150.636
52DAP/reference1.105650.548
57DAP/reference1.079360.478

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.952030.629
27DAP/17DAP1.095830.822
39DAP/27DAP1.288610.296
41DAP/39DAP1.361150.326
42DAP/41DAP0.843410.35
43DAP/42DAP1.355030.04
47DAP/43DAP1.392840.04
52DAP/47DAP1.4180.255
57DAP/52DAP2.434640.057
57DAP/7DAP1.80002

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992950.682
17DAP/reference0.967280.447
27DAP/reference0.982190.53
39DAP/reference0.976560.474
41DAP/reference0.997560.677
42DAP/reference1.026831
43DAP/reference1.115590.408
47DAP/reference1.058180.868
52DAP/reference0.997930.74
57DAP/reference1.189460.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960980.592
17DAP/reference0.892890.201
27DAP/reference0.885430.188
39DAP/reference0.920760.265
41DAP/reference1.381480.042
42DAP/reference1.012521
43DAP/reference0.91590.361
47DAP/reference1.151350.089
52DAP/reference1.059841
57DAP/reference0.967840.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.095210.347
17DAP/reference0.843330.221
27DAP/reference1.024910.843
39DAP/reference0.84580.069
41DAP/reference0.884080.209
42DAP/reference0.85980.134
43DAP/reference0.891950.143
47DAP/reference0.955350.421
52DAP/reference1.164380.917
57DAP/reference1.102280.126

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.634760.43
26DAP/20DAP0.906951
34DAP/26DAP1.383830.079
51DAP/34DAP2.092120.039
52DAP/51DAP1.413110.202
53DAP/52DAP0.782930.052
55DAP/53DAP1.196960.494
57DAP/55DAP1.496570.07
62DAP/57DAP1.027210.935
68DAP/62DAP1.098491
68DAP/14DAP1.994530.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.512220.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.211210.061
Mature Green Tomato/Ripe Tomato0.137760.017
Immature Eggplant/Mature Eggplant4.053230.05
Ripe Pepper/Ripe Tomato1.046681
Mature Eggplant/Ripe Tomato0.245790.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.067120.473
1-1-2/M821.164111
12-2/M82N/AN/A
12-4/M820.860910.619
1-3/M82N/AN/A
2-1-1/M820.81654
2-1/M82N/AN/A
2-6/M821.290030.695
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.371170.853
4-3-2/M821.03993
4-3/M821.226461
5-3/M820.643360.642
6-2/M821.06481
6-3/M821.155961
7-1/M821.51407
7-2/M821.03012
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.023121
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.994171
IL12-4/WTpooled1.233110.522
IL1-4/WTpooled0.994111
WT/WTpooled1.010911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.286771

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083610.921
DC3000/delta hrp 6h1.133321
DC3000/delta hrp 12h1.50538
DC3000/delta hrp 24h1.874630.036

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB4.51915

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.124621
Exp 36h2.356190.693
Exp 60h1.945160.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.939491
Var 0h0.492310.457
Var 12h I row2-row11.228550.215
Var 12h NI row2-row10.802930.627
Var 36h I row2-row11.065541
Var 36h NI row2-row10.825250.549
Var 60h I row2-row10.675540.285
Var 60h NI row2-row10.870150.318
Time course 0hI-0hNI1.059220.603
Time course 12hI-12hNI1.840750.004
Time course 36hI-36hNI3.286270.004
Time course 60hI-60hNI5.826230.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.094170.798
transgenic ySAMdc/azygous control (breaker)0.497750.118
transgenic ySAMdc/azygous control (red)1.19070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.161450.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.865730.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.815671
Manapal/WT (break)0.840071
Manapal/WT (red)0.303640.181