Expression of 1-1-1.2.13.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.5081 | 0.018 |
27DAP/17DAP | 1.54322 | 0.437 |
39DAP/27DAP | 1.01495 | 1 |
41DAP/39DAP | 1.21573 | 0.701 |
42DAP/41DAP | 1.0316 | 1 |
43DAP/42DAP | 1.0201 | 0.937 |
47DAP/43DAP | 1.2326 | 0.198 |
52DAP/47DAP | 1.85306 | 0.294 |
57DAP/52DAP | 0.91842 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92521 | 0.336 |
17DAP/reference | 0.79668 | 0.053 |
27DAP/reference | 1.10047 | 0.52 |
39DAP/reference | 0.77723 | 0.054 |
41DAP/reference | 0.64797 | 0.031 |
42DAP/reference | 1.06096 | 0.523 |
43DAP/reference | 0.99946 | 0.942 |
47DAP/reference | 1.00315 | 0.636 |
52DAP/reference | 1.10565 | 0.548 |
57DAP/reference | 1.07936 | 0.478 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95203 | 0.629 |
27DAP/17DAP | 1.09583 | 0.822 |
39DAP/27DAP | 1.28861 | 0.296 |
41DAP/39DAP | 1.36115 | 0.326 |
42DAP/41DAP | 0.84341 | 0.35 |
43DAP/42DAP | 1.35503 | 0.04 |
47DAP/43DAP | 1.39284 | 0.04 |
52DAP/47DAP | 1.418 | 0.255 |
57DAP/52DAP | 2.43464 | 0.057 |
57DAP/7DAP | 1.80002 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99295 | 0.682 |
17DAP/reference | 0.96728 | 0.447 |
27DAP/reference | 0.98219 | 0.53 |
39DAP/reference | 0.97656 | 0.474 |
41DAP/reference | 0.99756 | 0.677 |
42DAP/reference | 1.02683 | 1 |
43DAP/reference | 1.11559 | 0.408 |
47DAP/reference | 1.05818 | 0.868 |
52DAP/reference | 0.99793 | 0.74 |
57DAP/reference | 1.18946 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96098 | 0.592 |
17DAP/reference | 0.89289 | 0.201 |
27DAP/reference | 0.88543 | 0.188 |
39DAP/reference | 0.92076 | 0.265 |
41DAP/reference | 1.38148 | 0.042 |
42DAP/reference | 1.01252 | 1 |
43DAP/reference | 0.9159 | 0.361 |
47DAP/reference | 1.15135 | 0.089 |
52DAP/reference | 1.05984 | 1 |
57DAP/reference | 0.96784 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09521 | 0.347 |
17DAP/reference | 0.84333 | 0.221 |
27DAP/reference | 1.02491 | 0.843 |
39DAP/reference | 0.8458 | 0.069 |
41DAP/reference | 0.88408 | 0.209 |
42DAP/reference | 0.8598 | 0.134 |
43DAP/reference | 0.89195 | 0.143 |
47DAP/reference | 0.95535 | 0.421 |
52DAP/reference | 1.16438 | 0.917 |
57DAP/reference | 1.10228 | 0.126 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.63476 | 0.43 |
26DAP/20DAP | 0.90695 | 1 |
34DAP/26DAP | 1.38383 | 0.079 |
51DAP/34DAP | 2.09212 | 0.039 |
52DAP/51DAP | 1.41311 | 0.202 |
53DAP/52DAP | 0.78293 | 0.052 |
55DAP/53DAP | 1.19696 | 0.494 |
57DAP/55DAP | 1.49657 | 0.07 |
62DAP/57DAP | 1.02721 | 0.935 |
68DAP/62DAP | 1.09849 | 1 |
68DAP/14DAP | 1.99453 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.51222 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.21121 | 0.061 |
Mature Green Tomato/Ripe Tomato | 0.13776 | 0.017 |
Immature Eggplant/Mature Eggplant | 4.05323 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.04668 | 1 |
Mature Eggplant/Ripe Tomato | 0.24579 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06712 | 0.473 |
1-1-2/M82 | 1.16411 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.86091 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.81654 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.29003 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.37117 | 0.853 |
4-3-2/M82 | 1.03993 | |
4-3/M82 | 1.22646 | 1 |
5-3/M82 | 0.64336 | 0.642 |
6-2/M82 | 1.06481 | |
6-3/M82 | 1.15596 | 1 |
7-1/M82 | 1.51407 | |
7-2/M82 | 1.03012 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.02312 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99417 | 1 |
IL12-4/WTpooled | 1.23311 | 0.522 |
IL1-4/WTpooled | 0.99411 | 1 |
WT/WTpooled | 1.01091 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28677 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08361 | 0.921 |
DC3000/delta hrp 6h | 1.13332 | 1 |
DC3000/delta hrp 12h | 1.50538 | |
DC3000/delta hrp 24h | 1.87463 | 0.036 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 4.51915 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12462 | 1 |
Exp 36h | 2.35619 | 0.693 |
Exp 60h | 1.94516 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93949 | 1 |
Var 0h | 0.49231 | 0.457 |
Var 12h I row2-row1 | 1.22855 | 0.215 |
Var 12h NI row2-row1 | 0.80293 | 0.627 |
Var 36h I row2-row1 | 1.06554 | 1 |
Var 36h NI row2-row1 | 0.82525 | 0.549 |
Var 60h I row2-row1 | 0.67554 | 0.285 |
Var 60h NI row2-row1 | 0.87015 | 0.318 |
Time course 0hI-0hNI | 1.05922 | 0.603 |
Time course 12hI-12hNI | 1.84075 | 0.004 |
Time course 36hI-36hNI | 3.28627 | 0.004 |
Time course 60hI-60hNI | 5.82623 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09417 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.49775 | 0.118 |
transgenic ySAMdc/azygous control (red) | 1.1907 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16145 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.86573 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81567 | 1 |
Manapal/WT (break) | 0.84007 | 1 |
Manapal/WT (red) | 0.30364 | 0.181 |
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