Expression of 1-1-1.2.13.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01189 | 0.997 |
27DAP/17DAP | 0.74146 | 0.363 |
39DAP/27DAP | 1.1307 | 0.759 |
41DAP/39DAP | 1.33178 | 0.575 |
42DAP/41DAP | 0.89053 | 1 |
43DAP/42DAP | 1.05905 | 1 |
47DAP/43DAP | 1.09735 | 0.873 |
52DAP/47DAP | 1.24757 | 0.794 |
57DAP/52DAP | 0.93952 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03279 | 0.366 |
17DAP/reference | 1.03443 | 0.154 |
27DAP/reference | 1.01045 | 0.847 |
39DAP/reference | 1.07256 | 0.026 |
41DAP/reference | 1.04462 | 0.421 |
42DAP/reference | 1.00595 | 0.963 |
43DAP/reference | 1.03299 | 0.34 |
47DAP/reference | 1.02188 | 0.728 |
52DAP/reference | 1.01513 | 0.695 |
57DAP/reference | 1.01931 | 0.582 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00495 | 1 |
27DAP/17DAP | 0.94954 | 0.684 |
39DAP/27DAP | 1.01729 | 0.728 |
41DAP/39DAP | 1.04253 | 0.65 |
42DAP/41DAP | 1.01229 | 1 |
43DAP/42DAP | 0.96255 | 0.256 |
47DAP/43DAP | 0.95355 | 0.447 |
52DAP/47DAP | 1.01159 | 0.956 |
57DAP/52DAP | 1.07921 | 0.5 |
57DAP/7DAP | 1.01899 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33529 | 0.257 |
17DAP/reference | 1.11061 | 0.754 |
27DAP/reference | 1.16747 | 0.014 |
39DAP/reference | 1.70646 | 0.006 |
41DAP/reference | 1.65211 | 0.023 |
42DAP/reference | 1.37419 | 0.046 |
43DAP/reference | 1.34766 | 0.118 |
47DAP/reference | 1.2663 | 0.318 |
52DAP/reference | 1.67878 | 0.011 |
57DAP/reference | 1.77957 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01705 | 0.802 |
17DAP/reference | 1.04629 | 0.303 |
27DAP/reference | 1.01771 | 0.974 |
39DAP/reference | 0.98182 | 0.428 |
41DAP/reference | 0.92604 | 0.121 |
42DAP/reference | 1.05939 | 0.398 |
43DAP/reference | 0.95826 | 0.459 |
47DAP/reference | 1.05928 | 0.225 |
52DAP/reference | 1.04826 | 0.223 |
57DAP/reference | 0.98219 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09073 | 0.575 |
17DAP/reference | 1.00244 | 1 |
27DAP/reference | 1.02452 | 1 |
39DAP/reference | 1.18621 | 0.059 |
41DAP/reference | 1.16003 | 0.093 |
42DAP/reference | 0.96399 | 0.552 |
43DAP/reference | 1.05186 | 0.858 |
47DAP/reference | 0.9613 | 0.409 |
52DAP/reference | 1.45382 | 0.1 |
57DAP/reference | 0.88568 | 0.217 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02269 | 0.966 |
26DAP/20DAP | 0.96905 | 1 |
34DAP/26DAP | 1.00718 | 1 |
51DAP/34DAP | 0.84915 | 0.078 |
52DAP/51DAP | 0.90765 | 0.063 |
53DAP/52DAP | 0.97021 | 0.817 |
55DAP/53DAP | 1.07617 | 0.693 |
57DAP/55DAP | 0.92157 | 0.718 |
62DAP/57DAP | 0.98633 | 1 |
68DAP/62DAP | 1.1075 | 0.316 |
68DAP/14DAP | 1.02387 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96324 | 0.304 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03142 | |
Mature Green Tomato/Ripe Tomato | 1.08684 | |
Immature Eggplant/Mature Eggplant | 1.98611 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.67208 | |
Mature Eggplant/Ripe Tomato | 2.93564 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03911 | 1 |
1-1-2/M82 | 1.25085 | 0.972 |
12-2/M82 | 1.10699 | 1 |
12-4/M82 | 1.01396 | 1 |
1-3/M82 | 0.98285 | 1 |
2-1-1/M82 | 1.07104 | 0.764 |
2-1/M82 | 1.09633 | |
2-6/M82 | 1.03129 | 0.695 |
3-2/M82 | 1.01402 | |
4-1-1/M82 | 1.01834 | 1 |
4-1/M82 | 0.99282 | |
4-3-2/M82 | 1.22588 | |
4-3/M82 | 1.08014 | 1 |
5-3/M82 | 0.99532 | 1 |
6-2/M82 | 1.00382 | 1 |
6-3/M82 | 0.95144 | 1 |
7-1/M82 | 0.93028 | 0.509 |
7-2/M82 | 0.99203 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92622 | 1 |
IL2-6/WTpooled | 1.36238 | 0.441 |
IL7-5/WTpooled | 1.19784 | 0.792 |
IL7-3/WTpooled | 0.88251 | 0.294 |
IL12-4/WTpooled | 1.01503 | 0.839 |
IL1-4/WTpooled | 1.00852 | 1 |
WT/WTpooled | 0.96709 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01929 | 0.921 |
DC3000/delta hrp 6h | 2.048 | 1 |
DC3000/delta hrp 12h | 0.9095 | 1 |
DC3000/delta hrp 24h | 1.13648 | 0.054 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.3846 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.25161 | 0.2 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.90807 | 1 |
Var 0h | 0.82439 | 1 |
Var 12h I row2-row1 | 1.21257 | 0.171 |
Var 12h NI row2-row1 | 0.97943 | 0.906 |
Var 36h I row2-row1 | 0.97654 | 1 |
Var 36h NI row2-row1 | 0.84543 | 0.478 |
Var 60h I row2-row1 | 1.27615 | 0.562 |
Var 60h NI row2-row1 | 1.15794 | 1 |
Time course 0hI-0hNI | 1.08697 | 0.852 |
Time course 12hI-12hNI | 1.07649 | 0.63 |
Time course 36hI-36hNI | 0.99571 | 0.708 |
Time course 60hI-60hNI | 2.08004 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.85403 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.68004 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.4561 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01957 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06328 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.28178 | 0.307 |
Manapal/WT (break) | 0.9479 | 1 |
Manapal/WT (red) | 0.92013 | 0.863 |
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