Expression of 1-1-1.2.13.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.011890.997
27DAP/17DAP0.741460.363
39DAP/27DAP1.13070.759
41DAP/39DAP1.331780.575
42DAP/41DAP0.890531
43DAP/42DAP1.059051
47DAP/43DAP1.097350.873
52DAP/47DAP1.247570.794
57DAP/52DAP0.939520.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.032790.366
17DAP/reference1.034430.154
27DAP/reference1.010450.847
39DAP/reference1.072560.026
41DAP/reference1.044620.421
42DAP/reference1.005950.963
43DAP/reference1.032990.34
47DAP/reference1.021880.728
52DAP/reference1.015130.695
57DAP/reference1.019310.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.004951
27DAP/17DAP0.949540.684
39DAP/27DAP1.017290.728
41DAP/39DAP1.042530.65
42DAP/41DAP1.012291
43DAP/42DAP0.962550.256
47DAP/43DAP0.953550.447
52DAP/47DAP1.011590.956
57DAP/52DAP1.079210.5
57DAP/7DAP1.018991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.335290.257
17DAP/reference1.110610.754
27DAP/reference1.167470.014
39DAP/reference1.706460.006
41DAP/reference1.652110.023
42DAP/reference1.374190.046
43DAP/reference1.347660.118
47DAP/reference1.26630.318
52DAP/reference1.678780.011
57DAP/reference1.779570.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.017050.802
17DAP/reference1.046290.303
27DAP/reference1.017710.974
39DAP/reference0.981820.428
41DAP/reference0.926040.121
42DAP/reference1.059390.398
43DAP/reference0.958260.459
47DAP/reference1.059280.225
52DAP/reference1.048260.223
57DAP/reference0.982190.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.090730.575
17DAP/reference1.002441
27DAP/reference1.024521
39DAP/reference1.186210.059
41DAP/reference1.160030.093
42DAP/reference0.963990.552
43DAP/reference1.051860.858
47DAP/reference0.96130.409
52DAP/reference1.453820.1
57DAP/reference0.885680.217

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.022690.966
26DAP/20DAP0.969051
34DAP/26DAP1.007181
51DAP/34DAP0.849150.078
52DAP/51DAP0.907650.063
53DAP/52DAP0.970210.817
55DAP/53DAP1.076170.693
57DAP/55DAP0.921570.718
62DAP/57DAP0.986331
68DAP/62DAP1.10750.316
68DAP/14DAP1.023870.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.963240.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.03142
Mature Green Tomato/Ripe Tomato1.08684
Immature Eggplant/Mature Eggplant1.986110.05
Ripe Pepper/Ripe Tomato0.67208
Mature Eggplant/Ripe Tomato2.93564

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.039111
1-1-2/M821.250850.972
12-2/M821.106991
12-4/M821.013961
1-3/M820.982851
2-1-1/M821.071040.764
2-1/M821.09633
2-6/M821.031290.695
3-2/M821.01402
4-1-1/M821.018341
4-1/M820.99282
4-3-2/M821.22588
4-3/M821.080141
5-3/M820.995321
6-2/M821.003821
6-3/M820.951441
7-1/M820.930280.509
7-2/M820.992031
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.926221
IL2-6/WTpooled1.362380.441
IL7-5/WTpooled1.197840.792
IL7-3/WTpooled0.882510.294
IL12-4/WTpooled1.015030.839
IL1-4/WTpooled1.008521
WT/WTpooled0.967091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.019290.921
DC3000/delta hrp 6h2.0481
DC3000/delta hrp 12h0.90951
DC3000/delta hrp 24h1.136480.054

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.38460.076
DC3000 delta B/DC3000 delta AB1.251610.2

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.908071
Var 0h0.824391
Var 12h I row2-row11.212570.171
Var 12h NI row2-row10.979430.906
Var 36h I row2-row10.976541
Var 36h NI row2-row10.845430.478
Var 60h I row2-row11.276150.562
Var 60h NI row2-row11.157941
Time course 0hI-0hNI1.086970.852
Time course 12hI-12hNI1.076490.63
Time course 36hI-36hNI0.995710.708
Time course 60hI-60hNI2.080040.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.854030.297
transgenic ySAMdc/azygous control (breaker)1.680040.248
transgenic ySAMdc/azygous control (red)1.45610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.019570.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.063281

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.281780.307
Manapal/WT (break)0.94791
Manapal/WT (red)0.920130.863