Expression of 1-1-1.2.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.865710.217
27DAP/17DAP0.982021
39DAP/27DAP1.049260.992
41DAP/39DAP1.146990.27
42DAP/41DAP1.341770.712
43DAP/42DAP1.125181
47DAP/43DAP0.866170.565
52DAP/47DAP1.064810.949
57DAP/52DAP1.072270.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.962710.422
17DAP/reference0.932250.368
27DAP/reference0.974030.514
39DAP/reference1.001461
41DAP/reference0.972590.542
42DAP/reference0.894290.007
43DAP/reference1.00181
47DAP/reference0.858910.002
52DAP/reference0.855390.058
57DAP/reference0.877150.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.984910.763
27DAP/17DAP1.217520.573
39DAP/27DAP1.03990.623
41DAP/39DAP1.041280.876
42DAP/41DAP1.002350.939
43DAP/42DAP1.062030.122
47DAP/43DAP0.970440.846
52DAP/47DAP0.996160.962
57DAP/52DAP0.941190.461
57DAP/7DAP0.962281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997170.758
17DAP/reference0.971120.295
27DAP/reference0.981250.248
39DAP/reference1.006120.909
41DAP/reference0.945960.122
42DAP/reference0.960860.106
43DAP/reference0.980420.421
47DAP/reference0.958940.293
52DAP/reference0.963590.254
57DAP/reference0.996780.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066360.206
17DAP/reference0.968490.399
27DAP/reference0.946730.292
39DAP/reference0.883590.042
41DAP/reference0.908220.152
42DAP/reference0.866680.022
43DAP/reference0.974360.592
47DAP/reference0.906720.061
52DAP/reference0.885510.04
57DAP/reference1.016930.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069990.505
17DAP/reference1.021990.887
27DAP/reference1.014060.934
39DAP/reference0.959560.015
41DAP/reference1.070040.397
42DAP/reference0.920080.172
43DAP/reference0.923740.256
47DAP/reference0.953820.315
52DAP/reference0.944810.376
57DAP/reference0.719420.026

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948491
26DAP/20DAP0.935930.512
34DAP/26DAP0.914680.539
51DAP/34DAP1.088490.785
52DAP/51DAP0.973321
53DAP/52DAP1.010030.944
55DAP/53DAP1.0640.869
57DAP/55DAP0.958460.804
62DAP/57DAP1.300370.081
68DAP/62DAP0.825190.345
68DAP/14DAP1.077690.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.845740.046

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.083880.417
Mature Green Tomato/Ripe Tomato0.751840.079
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato7.062390.258
Mature Eggplant/Ripe Tomato2.639161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.042990.877
1-1-2/M820.943010.958
12-2/M821.18221
12-4/M820.973571
1-3/M820.920090.501
2-1-1/M820.944641
2-1/M821.28977
2-6/M821.012351
3-2/M820.89885
4-1-1/M821.08711
4-1/M820.97901
4-3-2/M820.972471
4-3/M820.705530.578
5-3/M820.955231
6-2/M820.957691
6-3/M820.992681
7-1/M820.99481
7-2/M821.030411
9-3-2/M820.843750.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.79076
IL2-6/WTpooled0.725091
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.546951
IL12-4/WTpooled1.002851
IL1-4/WTpooled1.016231
WT/WTpooled0.996061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.008561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018191
DC3000/delta hrp 6h0.966220.95
DC3000/delta hrp 12h1.41339
DC3000/delta hrp 24h1.080170.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.943080.66
DC3000 delta B/DC3000 delta AB1.080080.449

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.854951
Exp 36h0.547110.406
Exp 60h0.553670.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960911
Var 0h0.407730.244
Var 12h I row2-row10.90240.627
Var 12h NI row2-row10.923620.713
Var 36h I row2-row10.704120.805
Var 36h NI row2-row10.951570.743
Var 60h I row2-row10.993271
Var 60h NI row2-row11.059080.904
Time course 0hI-0hNI0.953560.612
Time course 12hI-12hNI1.011010.861
Time course 36hI-36hNI0.956550.418
Time course 60hI-60hNI0.736990.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.22850.347
transgenic ySAMdc/azygous control (breaker)1.751150.162
transgenic ySAMdc/azygous control (red)1.259130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.041930.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.433610.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.307230.083
Manapal/WT (break)3.392520.13
Manapal/WT (red)1.901050.142