Expression of 1-1-1.2.13.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86571 | 0.217 |
27DAP/17DAP | 0.98202 | 1 |
39DAP/27DAP | 1.04926 | 0.992 |
41DAP/39DAP | 1.14699 | 0.27 |
42DAP/41DAP | 1.34177 | 0.712 |
43DAP/42DAP | 1.12518 | 1 |
47DAP/43DAP | 0.86617 | 0.565 |
52DAP/47DAP | 1.06481 | 0.949 |
57DAP/52DAP | 1.07227 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96271 | 0.422 |
17DAP/reference | 0.93225 | 0.368 |
27DAP/reference | 0.97403 | 0.514 |
39DAP/reference | 1.00146 | 1 |
41DAP/reference | 0.97259 | 0.542 |
42DAP/reference | 0.89429 | 0.007 |
43DAP/reference | 1.0018 | 1 |
47DAP/reference | 0.85891 | 0.002 |
52DAP/reference | 0.85539 | 0.058 |
57DAP/reference | 0.87715 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98491 | 0.763 |
27DAP/17DAP | 1.21752 | 0.573 |
39DAP/27DAP | 1.0399 | 0.623 |
41DAP/39DAP | 1.04128 | 0.876 |
42DAP/41DAP | 1.00235 | 0.939 |
43DAP/42DAP | 1.06203 | 0.122 |
47DAP/43DAP | 0.97044 | 0.846 |
52DAP/47DAP | 0.99616 | 0.962 |
57DAP/52DAP | 0.94119 | 0.461 |
57DAP/7DAP | 0.96228 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99717 | 0.758 |
17DAP/reference | 0.97112 | 0.295 |
27DAP/reference | 0.98125 | 0.248 |
39DAP/reference | 1.00612 | 0.909 |
41DAP/reference | 0.94596 | 0.122 |
42DAP/reference | 0.96086 | 0.106 |
43DAP/reference | 0.98042 | 0.421 |
47DAP/reference | 0.95894 | 0.293 |
52DAP/reference | 0.96359 | 0.254 |
57DAP/reference | 0.99678 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06636 | 0.206 |
17DAP/reference | 0.96849 | 0.399 |
27DAP/reference | 0.94673 | 0.292 |
39DAP/reference | 0.88359 | 0.042 |
41DAP/reference | 0.90822 | 0.152 |
42DAP/reference | 0.86668 | 0.022 |
43DAP/reference | 0.97436 | 0.592 |
47DAP/reference | 0.90672 | 0.061 |
52DAP/reference | 0.88551 | 0.04 |
57DAP/reference | 1.01693 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06999 | 0.505 |
17DAP/reference | 1.02199 | 0.887 |
27DAP/reference | 1.01406 | 0.934 |
39DAP/reference | 0.95956 | 0.015 |
41DAP/reference | 1.07004 | 0.397 |
42DAP/reference | 0.92008 | 0.172 |
43DAP/reference | 0.92374 | 0.256 |
47DAP/reference | 0.95382 | 0.315 |
52DAP/reference | 0.94481 | 0.376 |
57DAP/reference | 0.71942 | 0.026 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94849 | 1 |
26DAP/20DAP | 0.93593 | 0.512 |
34DAP/26DAP | 0.91468 | 0.539 |
51DAP/34DAP | 1.08849 | 0.785 |
52DAP/51DAP | 0.97332 | 1 |
53DAP/52DAP | 1.01003 | 0.944 |
55DAP/53DAP | 1.064 | 0.869 |
57DAP/55DAP | 0.95846 | 0.804 |
62DAP/57DAP | 1.30037 | 0.081 |
68DAP/62DAP | 0.82519 | 0.345 |
68DAP/14DAP | 1.07769 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84574 | 0.046 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08388 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.75184 | 0.079 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 7.06239 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.63916 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04299 | 0.877 |
1-1-2/M82 | 0.94301 | 0.958 |
12-2/M82 | 1.1822 | 1 |
12-4/M82 | 0.97357 | 1 |
1-3/M82 | 0.92009 | 0.501 |
2-1-1/M82 | 0.94464 | 1 |
2-1/M82 | 1.28977 | |
2-6/M82 | 1.01235 | 1 |
3-2/M82 | 0.89885 | |
4-1-1/M82 | 1.0871 | 1 |
4-1/M82 | 0.97901 | |
4-3-2/M82 | 0.97247 | 1 |
4-3/M82 | 0.70553 | 0.578 |
5-3/M82 | 0.95523 | 1 |
6-2/M82 | 0.95769 | 1 |
6-3/M82 | 0.99268 | 1 |
7-1/M82 | 0.9948 | 1 |
7-2/M82 | 1.03041 | 1 |
9-3-2/M82 | 0.84375 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.79076 | |
IL2-6/WTpooled | 0.72509 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.54695 | 1 |
IL12-4/WTpooled | 1.00285 | 1 |
IL1-4/WTpooled | 1.01623 | 1 |
WT/WTpooled | 0.99606 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00856 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01819 | 1 |
DC3000/delta hrp 6h | 0.96622 | 0.95 |
DC3000/delta hrp 12h | 1.41339 | |
DC3000/delta hrp 24h | 1.08017 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94308 | 0.66 |
DC3000 delta B/DC3000 delta AB | 1.08008 | 0.449 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85495 | 1 |
Exp 36h | 0.54711 | 0.406 |
Exp 60h | 0.55367 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96091 | 1 |
Var 0h | 0.40773 | 0.244 |
Var 12h I row2-row1 | 0.9024 | 0.627 |
Var 12h NI row2-row1 | 0.92362 | 0.713 |
Var 36h I row2-row1 | 0.70412 | 0.805 |
Var 36h NI row2-row1 | 0.95157 | 0.743 |
Var 60h I row2-row1 | 0.99327 | 1 |
Var 60h NI row2-row1 | 1.05908 | 0.904 |
Time course 0hI-0hNI | 0.95356 | 0.612 |
Time course 12hI-12hNI | 1.01101 | 0.861 |
Time course 36hI-36hNI | 0.95655 | 0.418 |
Time course 60hI-60hNI | 0.73699 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.2285 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.75115 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.25913 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04193 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.43361 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.30723 | 0.083 |
Manapal/WT (break) | 3.39252 | 0.13 |
Manapal/WT (red) | 1.90105 | 0.142 |
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