Expression of 1-1-1.2.14.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.325580.63
27DAP/17DAP1.191530.859
39DAP/27DAP1.32210.391
41DAP/39DAP1.02750.905
42DAP/41DAP1.146750.938
43DAP/42DAP1.056291
47DAP/43DAP0.829210.487
52DAP/47DAP0.980660.873
57DAP/52DAP1.066010.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.961040.442
17DAP/reference0.809350.019
27DAP/reference0.950310.484
39DAP/reference0.916440.315
41DAP/reference0.89610.065
42DAP/reference1.079710.113
43DAP/reference0.929740.36
47DAP/reference1.067981
52DAP/reference1.157880.092
57DAP/reference0.981480.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.148830.642
27DAP/17DAP1.13620.403
39DAP/27DAP1.015451
41DAP/39DAP0.930590.63
42DAP/41DAP1.070170.8
43DAP/42DAP1.038310.413
47DAP/43DAP1.051430.749
52DAP/47DAP1.110720.703
57DAP/52DAP1.177290.523
57DAP/7DAP1.140141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.875550.086
17DAP/reference0.955080.124
27DAP/reference0.985420.462
39DAP/reference0.960870.025
41DAP/reference0.882220.027
42DAP/reference0.951710.211
43DAP/reference0.943170.159
47DAP/reference0.900040.293
52DAP/reference0.893290.126
57DAP/reference0.915550.144

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.913660.374
17DAP/reference0.913590.245
27DAP/reference0.978370.537
39DAP/reference0.841960.064
41DAP/reference0.853990.085
42DAP/reference0.909850.135
43DAP/reference1.053810.863
47DAP/reference0.90990.081
52DAP/reference0.815040.009
57DAP/reference0.858680.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.913620.032
17DAP/reference0.893220.144
27DAP/reference0.91980.081
39DAP/reference0.923170.022
41DAP/reference0.959270.209
42DAP/reference1.095850.391
43DAP/reference1.052270.58
47DAP/reference1.032430.704
52DAP/reference1.051660.639
57DAP/reference1.099840.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.400430.966
26DAP/20DAP0.987891
34DAP/26DAP0.99211
51DAP/34DAP1.005441
52DAP/51DAP1.051620.626
53DAP/52DAP0.934050.75
55DAP/53DAP1.175760.295
57DAP/55DAP1.021780.96
62DAP/57DAP1.079790.868
68DAP/62DAP1.096490.984
68DAP/14DAP0.790520.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.984850.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.491930.058
Mature Green Tomato/Ripe Tomato1.432910.02
Immature Eggplant/Mature Eggplant1.198420.07
Ripe Pepper/Ripe Tomato0.475590.224
Mature Eggplant/Ripe Tomato0.53371

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.99414
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.756970.243
IL2-6/WTpooled1.238480.788
IL7-5/WTpooled1.417890.792
IL7-3/WTpooled0.739940.31
IL12-4/WTpooled0.888760.71
IL1-4/WTpooled1.113681
WT/WTpooled0.970851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.099260.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928041
DC3000/delta hrp 6h0.999790.95
DC3000/delta hrp 12h1.256881
DC3000/delta hrp 24h2.667460.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.146960.081
DC3000 delta B/DC3000 delta AB1.220010.179

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.985381
Exp 36h1.147590.693
Exp 60h1.070120.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.046271
Var 0h1.292610.782
Var 12h I row2-row11.093080.654
Var 12h NI row2-row10.888970.494
Var 36h I row2-row10.98991
Var 36h NI row2-row10.864470.645
Var 60h I row2-row11.099390.562
Var 60h NI row2-row11.026531
Time course 0hI-0hNI1.027240.833
Time course 12hI-12hNI1.021160.747
Time course 36hI-36hNI1.143420.056
Time course 60hI-60hNI1.111980.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.914280.314
transgenic ySAMdc/azygous control (breaker)1.002861
transgenic ySAMdc/azygous control (red)0.95251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.005730.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.517570.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.949741
Manapal/WT (break)0.915561
Manapal/WT (red)1.276831