Expression of 1-1-1.2.14.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95198 | 0.689 |
27DAP/17DAP | 1.18546 | 0.854 |
39DAP/27DAP | 1.03405 | 1 |
41DAP/39DAP | 1.07103 | 0.584 |
42DAP/41DAP | 0.98053 | 1 |
43DAP/42DAP | 0.94453 | 0.877 |
47DAP/43DAP | 1.60277 | 0.502 |
52DAP/47DAP | 2.41045 | 0.108 |
57DAP/52DAP | 0.99352 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19785 | 0.013 |
17DAP/reference | 1.13126 | 0.148 |
27DAP/reference | 1.10386 | 0.029 |
39DAP/reference | 0.96703 | 0.575 |
41DAP/reference | 0.99922 | 1 |
42DAP/reference | 1.10612 | 0.05 |
43DAP/reference | 0.99859 | 0.924 |
47DAP/reference | 1.8862 | 0.001 |
52DAP/reference | 2.03291 | 0.008 |
57DAP/reference | 1.19024 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.62188 | 0.046 |
27DAP/17DAP | 1.22802 | 0.442 |
39DAP/27DAP | 0.82171 | 0.083 |
41DAP/39DAP | 0.85218 | 0.246 |
42DAP/41DAP | 0.96932 | 0.721 |
43DAP/42DAP | 1.1652 | 0.162 |
47DAP/43DAP | 0.93719 | 0.554 |
52DAP/47DAP | 1.30308 | 0.245 |
57DAP/52DAP | 1.53332 | 0.198 |
57DAP/7DAP | 0.42684 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93155 | 0.246 |
17DAP/reference | 0.85364 | 0.021 |
27DAP/reference | 1.01098 | 1 |
39DAP/reference | 0.89112 | 0.031 |
41DAP/reference | 0.91896 | 0.044 |
42DAP/reference | 0.94252 | 0.1 |
43DAP/reference | 0.83645 | 0.035 |
47DAP/reference | 0.833 | 0.066 |
52DAP/reference | 0.81682 | 0.014 |
57DAP/reference | 0.742 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24858 | 0.083 |
17DAP/reference | 1.45846 | 0.007 |
27DAP/reference | 1.17827 | 0.075 |
39DAP/reference | 0.90391 | 0.298 |
41DAP/reference | 0.99588 | 0.601 |
42DAP/reference | 1.18229 | 0.153 |
43DAP/reference | 0.93851 | 0.423 |
47DAP/reference | 1.01888 | 0.89 |
52DAP/reference | 0.89348 | 0.121 |
57DAP/reference | 0.96672 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08029 | 1 |
17DAP/reference | 1.08159 | 0.757 |
27DAP/reference | 0.84264 | 0.147 |
39DAP/reference | 0.82086 | 0.033 |
41DAP/reference | 0.8568 | 0.046 |
42DAP/reference | 0.90398 | 0.22 |
43DAP/reference | 0.88567 | 0.102 |
47DAP/reference | 0.9692 | 0.509 |
52DAP/reference | 1.26933 | 0.295 |
57DAP/reference | 2.12079 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.75184 | 0.159 |
26DAP/20DAP | 0.89777 | 0.512 |
34DAP/26DAP | 0.86371 | 0.666 |
51DAP/34DAP | 0.54201 | 0.063 |
52DAP/51DAP | 1.05531 | 0.915 |
53DAP/52DAP | 0.79433 | 0.113 |
55DAP/53DAP | 0.80294 | 0.544 |
57DAP/55DAP | 0.71279 | 0.3 |
62DAP/57DAP | 1.19579 | 0.217 |
68DAP/62DAP | 0.86709 | 0.668 |
68DAP/14DAP | 0.3311 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.59921 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.44505 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.21918 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.359 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.18352 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13628 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98412 | 0.961 |
1-1-2/M82 | 0.81534 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.28153 | |
1-3/M82 | 0.85162 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.17819 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.99099 | 1 |
4-3-2/M82 | 1.33902 | |
4-3/M82 | 2.31735 | |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.40025 | |
7-1/M82 | 1.41758 | |
7-2/M82 | 0.77636 | |
9-3-2/M82 | 1.15851 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.57496 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8803 | |
IL12-4/WTpooled | 0.87601 | 1 |
IL1-4/WTpooled | 1.00339 | 1 |
WT/WTpooled | 0.89579 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.26653 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97677 | 1 |
DC3000/delta hrp 6h | 1.13554 | 1 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.45941 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.55416 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.52715 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99556 | 1 |
Exp 36h | 0.7303 | 0.539 |
Exp 60h | 0.69842 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97401 | 1 |
Var 0h | 0.85287 | 1 |
Var 12h I row2-row1 | 0.91644 | 0.338 |
Var 12h NI row2-row1 | 0.92418 | 0.627 |
Var 36h I row2-row1 | 1.03708 | 1 |
Var 36h NI row2-row1 | 1.06609 | 1 |
Var 60h I row2-row1 | 1.27013 | 0.543 |
Var 60h NI row2-row1 | 1.02655 | 1 |
Time course 0hI-0hNI | 1.11009 | 0.486 |
Time course 12hI-12hNI | 0.9285 | 0.324 |
Time course 36hI-36hNI | 0.79556 | 0.038 |
Time course 60hI-60hNI | 0.22902 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.78989 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.15349 | 1 |
transgenic ySAMdc/azygous control (red) | 0.69638 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94032 | 0.196 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.21013 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.78385 | 0.09 |
Manapal/WT (break) | 1.36197 | 1 |
Manapal/WT (red) | 2.998 | 0.142 |
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