Expression of 1-1-1.2.14.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951980.689
27DAP/17DAP1.185460.854
39DAP/27DAP1.034051
41DAP/39DAP1.071030.584
42DAP/41DAP0.980531
43DAP/42DAP0.944530.877
47DAP/43DAP1.602770.502
52DAP/47DAP2.410450.108
57DAP/52DAP0.993520.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.197850.013
17DAP/reference1.131260.148
27DAP/reference1.103860.029
39DAP/reference0.967030.575
41DAP/reference0.999221
42DAP/reference1.106120.05
43DAP/reference0.998590.924
47DAP/reference1.88620.001
52DAP/reference2.032910.008
57DAP/reference1.190240.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.621880.046
27DAP/17DAP1.228020.442
39DAP/27DAP0.821710.083
41DAP/39DAP0.852180.246
42DAP/41DAP0.969320.721
43DAP/42DAP1.16520.162
47DAP/43DAP0.937190.554
52DAP/47DAP1.303080.245
57DAP/52DAP1.533320.198
57DAP/7DAP0.426840.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931550.246
17DAP/reference0.853640.021
27DAP/reference1.010981
39DAP/reference0.891120.031
41DAP/reference0.918960.044
42DAP/reference0.942520.1
43DAP/reference0.836450.035
47DAP/reference0.8330.066
52DAP/reference0.816820.014
57DAP/reference0.7420.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.248580.083
17DAP/reference1.458460.007
27DAP/reference1.178270.075
39DAP/reference0.903910.298
41DAP/reference0.995880.601
42DAP/reference1.182290.153
43DAP/reference0.938510.423
47DAP/reference1.018880.89
52DAP/reference0.893480.121
57DAP/reference0.966720.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080291
17DAP/reference1.081590.757
27DAP/reference0.842640.147
39DAP/reference0.820860.033
41DAP/reference0.85680.046
42DAP/reference0.903980.22
43DAP/reference0.885670.102
47DAP/reference0.96920.509
52DAP/reference1.269330.295
57DAP/reference2.120790.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.751840.159
26DAP/20DAP0.897770.512
34DAP/26DAP0.863710.666
51DAP/34DAP0.542010.063
52DAP/51DAP1.055310.915
53DAP/52DAP0.794330.113
55DAP/53DAP0.802940.544
57DAP/55DAP0.712790.3
62DAP/57DAP1.195790.217
68DAP/62DAP0.867090.668
68DAP/14DAP0.33110.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.599210.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.445050.058
Mature Green Tomato/Ripe Tomato0.219180.017
Immature Eggplant/Mature Eggplant0.3590.058
Ripe Pepper/Ripe Tomato0.183520.224
Mature Eggplant/Ripe Tomato0.136280.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.984120.961
1-1-2/M820.815341
12-2/M82N/AN/A
12-4/M821.28153
1-3/M820.85162
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.178190.594
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.990991
4-3-2/M821.33902
4-3/M822.31735
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M820.40025
7-1/M821.41758
7-2/M820.77636
9-3-2/M821.158511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.574960.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.8803
IL12-4/WTpooled0.876011
IL1-4/WTpooled1.003391
WT/WTpooled0.895791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.266530.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976771
DC3000/delta hrp 6h1.135541
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.459410.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.554160.025
DC3000 delta B/DC3000 delta AB0.527150.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.995561
Exp 36h0.73030.539
Exp 60h0.698420.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974011
Var 0h0.852871
Var 12h I row2-row10.916440.338
Var 12h NI row2-row10.924180.627
Var 36h I row2-row11.037081
Var 36h NI row2-row11.066091
Var 60h I row2-row11.270130.543
Var 60h NI row2-row11.026551
Time course 0hI-0hNI1.110090.486
Time course 12hI-12hNI0.92850.324
Time course 36hI-36hNI0.795560.038
Time course 60hI-60hNI0.229020.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.789890.324
transgenic ySAMdc/azygous control (breaker)1.153491
transgenic ySAMdc/azygous control (red)0.696381

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.940320.196

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.210130.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.783850.09
Manapal/WT (break)1.361971
Manapal/WT (red)2.9980.142