Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.2.14.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03339	0.891
27DAP/17DAP	292.848	0.121
39DAP/27DAP	1.32035	0.553
41DAP/39DAP	0.81344	0.394
42DAP/41DAP	1.32384	0.912
43DAP/42DAP	0.94195	0.854
47DAP/43DAP	0.79646	0.444
52DAP/47DAP	1.0861	0.945
57DAP/52DAP	0.7396	0.613

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.21129	0.071
17DAP/reference	N/A	N/A
27DAP/reference	0.77725
39DAP/reference	0.60913
41DAP/reference	1.58044	0.312
42DAP/reference	1.24707	0.174
43DAP/reference	N/A	N/A
47DAP/reference	1.16429	0.448
52DAP/reference	0.33419
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.72002	0.093
27DAP/17DAP	1.00033	0.919
39DAP/27DAP	1.17989	0.793
41DAP/39DAP	0.92704	0.997
42DAP/41DAP	1.17216	0.8
43DAP/42DAP	0.97306	0.729
47DAP/43DAP	1.65295	0.026
52DAP/47DAP	0.57222	0.269
57DAP/52DAP	0.54998	0.144
57DAP/7DAP	0.66315	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.10574	0.351
17DAP/reference	1.28606	0.092
27DAP/reference	1.17804	0.16
39DAP/reference	1.23635	0.036
41DAP/reference	1.2649	0.02
42DAP/reference	1.39131	0.007
43DAP/reference	1.21885	0.087
47DAP/reference	1.29047	0.292
52DAP/reference	1.41113	0.018
57DAP/reference	1.10904	0.549

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	1.49354
27DAP/reference	1.12344
39DAP/reference	1.23633	1
41DAP/reference	0.84442	0.127
42DAP/reference	N/A	N/A
43DAP/reference	1.10931	0.809
47DAP/reference	7.91724
52DAP/reference	N/A	N/A
57DAP/reference	0.97334	0.789

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22605	0.505
17DAP/reference	1.12985	0.162
27DAP/reference	0.97463	0.465
39DAP/reference	1.05865	0.819
41DAP/reference	1.1454	0.397
42DAP/reference	1.7059	0.053
43DAP/reference	1.26396	0.183
47DAP/reference	0.84865
52DAP/reference	1.31567	0.062
57DAP/reference	1.36934

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.44655	0.566
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.97397	0.972
51DAP/34DAP	N/A	N/A
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.58077	0.24
55DAP/53DAP	2.00023	0.106
57DAP/55DAP	1.721	0.61
62DAP/57DAP	N/A	N/A
68DAP/62DAP	0.89849
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.04402
IL2-6/WTpooled	1.05956	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.80516	0.25
IL12-4/WTpooled	1.0548	1
IL1-4/WTpooled	1.01544	1
WT/WTpooled	1.00697	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.26208	1
Var 0h	0.9235	1
Var 12h I row2-row1	0.82269	0.565
Var 12h NI row2-row1	0.78288	0.627
Var 36h I row2-row1	1.04817	1
Var 36h NI row2-row1	0.87395	0.706
Var 60h I row2-row1	1.26936	0.523
Var 60h NI row2-row1	0.97836	1
Time course 0hI-0hNI	1.02397	0.867
Time course 12hI-12hNI	1.0338	0.833
Time course 36hI-36hNI	1.56321	0.007
Time course 60hI-60hNI	2.17407	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A