Expression of 1-1-1.2.14.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.088320.811
27DAP/17DAP1.283620.842
39DAP/27DAP1.432310.894
41DAP/39DAP0.941640.752
42DAP/41DAP0.947081
43DAP/42DAP1.26930.894
47DAP/43DAP1.626290.809
52DAP/47DAP1.301370.671
57DAP/52DAP1.377140.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.63037
17DAP/referenceN/AN/A
27DAP/reference0.83247
39DAP/referenceN/AN/A
41DAP/reference1.6590.808
42DAP/reference0.960250.425
43DAP/referenceN/AN/A
47DAP/reference1.645420.365
52DAP/reference0.37852
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.132450.899
27DAP/17DAP1.012320.919
39DAP/27DAP1.04670.845
41DAP/39DAP0.850540.822
42DAP/41DAP1.430020.886
43DAP/42DAP1.246760.699
47DAP/43DAP1.553440.414
52DAP/47DAP1.913280.703
57DAP/52DAP1.46810.357
57DAP/7DAP2.124021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.851390.059
17DAP/reference0.835860.044
27DAP/reference0.844620.01
39DAP/reference0.823660.013
41DAP/reference0.822720.035
42DAP/reference0.898820.053
43DAP/reference0.80330.02
47DAP/reference0.746830.168
52DAP/reference0.799310.014
57DAP/reference0.805720.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.750070.296
17DAP/reference2.28963
27DAP/reference1.503430.239
39DAP/reference0.71112
41DAP/reference0.958610.493
42DAP/reference1.02851
43DAP/reference1.748030.092
47DAP/reference0.875330.141
52DAP/reference0.43527
57DAP/reference0.33168

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.797020.029
17DAP/reference0.90130.348
27DAP/reference0.783180.032
39DAP/reference0.711730.007
41DAP/reference0.907320.077
42DAP/reference0.861490.041
43DAP/reference0.987240.66
47DAP/reference0.50616
52DAP/reference0.67020.062
57DAP/reference0.826460.387

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.746111
26DAP/20DAP0.869691
34DAP/26DAP4.11128
51DAP/34DAP1.15706
52DAP/51DAP1.177881
53DAP/52DAP0.777460.703
55DAP/53DAP1.323180.955
57DAP/55DAP0.84276
62DAP/57DAP1.179581
68DAP/62DAP1.5477
68DAP/14DAP1.22646

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.49382

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.524320.277
IL2-6/WTpooled1.001331
IL7-5/WTpooled2.745190.65
IL7-3/WTpooled1.031291
IL12-4/WTpooled1.236190.516
IL1-4/WTpooled1.505251
WT/WTpooled0.978641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.461121
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.247530.594
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A