Expression of 1-1-1.2.14.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08832 | 0.811 |
27DAP/17DAP | 1.28362 | 0.842 |
39DAP/27DAP | 1.43231 | 0.894 |
41DAP/39DAP | 0.94164 | 0.752 |
42DAP/41DAP | 0.94708 | 1 |
43DAP/42DAP | 1.2693 | 0.894 |
47DAP/43DAP | 1.62629 | 0.809 |
52DAP/47DAP | 1.30137 | 0.671 |
57DAP/52DAP | 1.37714 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.63037 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.83247 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.659 | 0.808 |
42DAP/reference | 0.96025 | 0.425 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.64542 | 0.365 |
52DAP/reference | 0.37852 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13245 | 0.899 |
27DAP/17DAP | 1.01232 | 0.919 |
39DAP/27DAP | 1.0467 | 0.845 |
41DAP/39DAP | 0.85054 | 0.822 |
42DAP/41DAP | 1.43002 | 0.886 |
43DAP/42DAP | 1.24676 | 0.699 |
47DAP/43DAP | 1.55344 | 0.414 |
52DAP/47DAP | 1.91328 | 0.703 |
57DAP/52DAP | 1.4681 | 0.357 |
57DAP/7DAP | 2.12402 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85139 | 0.059 |
17DAP/reference | 0.83586 | 0.044 |
27DAP/reference | 0.84462 | 0.01 |
39DAP/reference | 0.82366 | 0.013 |
41DAP/reference | 0.82272 | 0.035 |
42DAP/reference | 0.89882 | 0.053 |
43DAP/reference | 0.8033 | 0.02 |
47DAP/reference | 0.74683 | 0.168 |
52DAP/reference | 0.79931 | 0.014 |
57DAP/reference | 0.80572 | 0.022 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75007 | 0.296 |
17DAP/reference | 2.28963 | |
27DAP/reference | 1.50343 | 0.239 |
39DAP/reference | 0.71112 | |
41DAP/reference | 0.95861 | 0.493 |
42DAP/reference | 1.02851 | |
43DAP/reference | 1.74803 | 0.092 |
47DAP/reference | 0.87533 | 0.141 |
52DAP/reference | 0.43527 | |
57DAP/reference | 0.33168 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79702 | 0.029 |
17DAP/reference | 0.9013 | 0.348 |
27DAP/reference | 0.78318 | 0.032 |
39DAP/reference | 0.71173 | 0.007 |
41DAP/reference | 0.90732 | 0.077 |
42DAP/reference | 0.86149 | 0.041 |
43DAP/reference | 0.98724 | 0.66 |
47DAP/reference | 0.50616 | |
52DAP/reference | 0.6702 | 0.062 |
57DAP/reference | 0.82646 | 0.387 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74611 | 1 |
26DAP/20DAP | 0.86969 | 1 |
34DAP/26DAP | 4.11128 | |
51DAP/34DAP | 1.15706 | |
52DAP/51DAP | 1.17788 | 1 |
53DAP/52DAP | 0.77746 | 0.703 |
55DAP/53DAP | 1.32318 | 0.955 |
57DAP/55DAP | 0.84276 | |
62DAP/57DAP | 1.17958 | 1 |
68DAP/62DAP | 1.5477 | |
68DAP/14DAP | 1.22646 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.49382 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.52432 | 0.277 |
IL2-6/WTpooled | 1.00133 | 1 |
IL7-5/WTpooled | 2.74519 | 0.65 |
IL7-3/WTpooled | 1.03129 | 1 |
IL12-4/WTpooled | 1.23619 | 0.516 |
IL1-4/WTpooled | 1.50525 | 1 |
WT/WTpooled | 0.97864 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.46112 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.24753 | 0.594 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
|
|