Expression of 1-1-1.2.15.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.994390.891
27DAP/17DAP1.418520.849
39DAP/27DAP1.222390.902
41DAP/39DAP1.142610.96
42DAP/41DAP0.943061
43DAP/42DAP1.114761
47DAP/43DAP1.060750.799
52DAP/47DAP1.492980.401
57DAP/52DAP1.301520.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.953160.238
17DAP/reference1.046840.112
27DAP/reference1.180910.06
39DAP/reference1.254680.026
41DAP/reference1.084740.287
42DAP/reference0.868090.025
43DAP/reference1.007480.982
47DAP/reference0.864320.018
52DAP/reference0.930210.31
57DAP/reference0.974160.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.942840.542
27DAP/17DAP0.964310.878
39DAP/27DAP1.352480.353
41DAP/39DAP1.368180.612
42DAP/41DAP0.835720.236
43DAP/42DAP0.859140.28
47DAP/43DAP1.146210.618
52DAP/47DAP0.987550.919
57DAP/52DAP1.031561
57DAP/7DAP0.990031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.772520.078
17DAP/reference0.81740.035
27DAP/reference1.127930.107
39DAP/reference0.727620.013
41DAP/reference0.7740.021
42DAP/reference0.871090.048
43DAP/reference0.743890.015
47DAP/reference0.830.05
52DAP/reference0.766070.03
57DAP/reference0.804230.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.286560.048
17DAP/reference1.027070.674
27DAP/reference0.998530.735
39DAP/reference0.970120.428
41DAP/reference1.137320.831
42DAP/reference0.971680.321
43DAP/reference1.552880.081
47DAP/reference1.035780.731
52DAP/reference1.0171
57DAP/reference1.207080.127

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926980.112
17DAP/reference0.993880.792
27DAP/reference0.992410.691
39DAP/reference0.961760.504
41DAP/reference0.978510.56
42DAP/reference0.992960.816
43DAP/reference0.77850.019
47DAP/reference1.006750.708
52DAP/reference0.922330.538
57DAP/reference0.657630.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.220780.43
26DAP/20DAP1.558560.196
34DAP/26DAP0.9010.619
51DAP/34DAP0.725590.086
52DAP/51DAP1.208570.404
53DAP/52DAP1.154840.121
55DAP/53DAP0.883020.577
57DAP/55DAP1.108480.975
62DAP/57DAP0.777750.28
68DAP/62DAP1.092460.95
68DAP/14DAP0.822591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.538850.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.219630.068
Mature Green Tomato/Ripe Tomato1.437080.331
Immature Eggplant/Mature Eggplant2.38293
Ripe Pepper/Ripe Tomato4.257420.258
Mature Eggplant/Ripe Tomato1.332111

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.105510.505
1-1-2/M821.007871
12-2/M82N/AN/A
12-4/M821.17406
1-3/M820.68856
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.866071
3-2/M82N/AN/A
4-1-1/M821.389771
4-1/M821.28262
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.911341
6-2/M820.97433
6-3/M821.177831
7-1/M82N/AN/A
7-2/M821.026031
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.491260.277
IL2-6/WTpooled1.310910.584
IL7-5/WTpooled1.748680.792
IL7-3/WTpooled1.151071
IL12-4/WTpooled1.318690.532
IL1-4/WTpooled1.196161
WT/WTpooled0.908031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.195520.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.019681
DC3000/delta hrp 6h1.038180.95
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.110760.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.788980.196
DC3000 delta B/DC3000 delta AB1.312720.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.165460.254
Exp 36h1.377350.489
Exp 60h1.413250.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.046991
Var 0h0.493371
Var 12h I row2-row11.057440.406
Var 12h NI row2-row10.857370.713
Var 36h I row2-row10.876321
Var 36h NI row2-row10.993971
Var 60h I row2-row10.745460.285
Var 60h NI row2-row10.913260.866
Time course 0hI-0hNI1.050160.833
Time course 12hI-12hNI1.105470.293
Time course 36hI-36hNI1.53840.005
Time course 60hI-60hNI2.324680.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.091950.256
transgenic ySAMdc/azygous control (breaker)0.987721
transgenic ySAMdc/azygous control (red)0.95681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.072040.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.872970.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.833561
Manapal/WT (break)0.947481
Manapal/WT (red)0.798110.242