Expression of 1-1-1.2.15.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99439 | 0.891 |
27DAP/17DAP | 1.41852 | 0.849 |
39DAP/27DAP | 1.22239 | 0.902 |
41DAP/39DAP | 1.14261 | 0.96 |
42DAP/41DAP | 0.94306 | 1 |
43DAP/42DAP | 1.11476 | 1 |
47DAP/43DAP | 1.06075 | 0.799 |
52DAP/47DAP | 1.49298 | 0.401 |
57DAP/52DAP | 1.30152 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95316 | 0.238 |
17DAP/reference | 1.04684 | 0.112 |
27DAP/reference | 1.18091 | 0.06 |
39DAP/reference | 1.25468 | 0.026 |
41DAP/reference | 1.08474 | 0.287 |
42DAP/reference | 0.86809 | 0.025 |
43DAP/reference | 1.00748 | 0.982 |
47DAP/reference | 0.86432 | 0.018 |
52DAP/reference | 0.93021 | 0.31 |
57DAP/reference | 0.97416 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94284 | 0.542 |
27DAP/17DAP | 0.96431 | 0.878 |
39DAP/27DAP | 1.35248 | 0.353 |
41DAP/39DAP | 1.36818 | 0.612 |
42DAP/41DAP | 0.83572 | 0.236 |
43DAP/42DAP | 0.85914 | 0.28 |
47DAP/43DAP | 1.14621 | 0.618 |
52DAP/47DAP | 0.98755 | 0.919 |
57DAP/52DAP | 1.03156 | 1 |
57DAP/7DAP | 0.99003 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77252 | 0.078 |
17DAP/reference | 0.8174 | 0.035 |
27DAP/reference | 1.12793 | 0.107 |
39DAP/reference | 0.72762 | 0.013 |
41DAP/reference | 0.774 | 0.021 |
42DAP/reference | 0.87109 | 0.048 |
43DAP/reference | 0.74389 | 0.015 |
47DAP/reference | 0.83 | 0.05 |
52DAP/reference | 0.76607 | 0.03 |
57DAP/reference | 0.80423 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28656 | 0.048 |
17DAP/reference | 1.02707 | 0.674 |
27DAP/reference | 0.99853 | 0.735 |
39DAP/reference | 0.97012 | 0.428 |
41DAP/reference | 1.13732 | 0.831 |
42DAP/reference | 0.97168 | 0.321 |
43DAP/reference | 1.55288 | 0.081 |
47DAP/reference | 1.03578 | 0.731 |
52DAP/reference | 1.017 | 1 |
57DAP/reference | 1.20708 | 0.127 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92698 | 0.112 |
17DAP/reference | 0.99388 | 0.792 |
27DAP/reference | 0.99241 | 0.691 |
39DAP/reference | 0.96176 | 0.504 |
41DAP/reference | 0.97851 | 0.56 |
42DAP/reference | 0.99296 | 0.816 |
43DAP/reference | 0.7785 | 0.019 |
47DAP/reference | 1.00675 | 0.708 |
52DAP/reference | 0.92233 | 0.538 |
57DAP/reference | 0.65763 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22078 | 0.43 |
26DAP/20DAP | 1.55856 | 0.196 |
34DAP/26DAP | 0.901 | 0.619 |
51DAP/34DAP | 0.72559 | 0.086 |
52DAP/51DAP | 1.20857 | 0.404 |
53DAP/52DAP | 1.15484 | 0.121 |
55DAP/53DAP | 0.88302 | 0.577 |
57DAP/55DAP | 1.10848 | 0.975 |
62DAP/57DAP | 0.77775 | 0.28 |
68DAP/62DAP | 1.09246 | 0.95 |
68DAP/14DAP | 0.82259 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.53885 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.21963 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.43708 | 0.331 |
Immature Eggplant/Mature Eggplant | 2.38293 | |
Ripe Pepper/Ripe Tomato | 4.25742 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.33211 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10551 | 0.505 |
1-1-2/M82 | 1.00787 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.17406 | |
1-3/M82 | 0.68856 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86607 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.38977 | 1 |
4-1/M82 | 1.28262 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.91134 | 1 |
6-2/M82 | 0.97433 | |
6-3/M82 | 1.17783 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.02603 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.49126 | 0.277 |
IL2-6/WTpooled | 1.31091 | 0.584 |
IL7-5/WTpooled | 1.74868 | 0.792 |
IL7-3/WTpooled | 1.15107 | 1 |
IL12-4/WTpooled | 1.31869 | 0.532 |
IL1-4/WTpooled | 1.19616 | 1 |
WT/WTpooled | 0.90803 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19552 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01968 | 1 |
DC3000/delta hrp 6h | 1.03818 | 0.95 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.11076 | 0.397 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78898 | 0.196 |
DC3000 delta B/DC3000 delta AB | 1.31272 | 0.217 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.16546 | 0.254 |
Exp 36h | 1.37735 | 0.489 |
Exp 60h | 1.41325 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04699 | 1 |
Var 0h | 0.49337 | 1 |
Var 12h I row2-row1 | 1.05744 | 0.406 |
Var 12h NI row2-row1 | 0.85737 | 0.713 |
Var 36h I row2-row1 | 0.87632 | 1 |
Var 36h NI row2-row1 | 0.99397 | 1 |
Var 60h I row2-row1 | 0.74546 | 0.285 |
Var 60h NI row2-row1 | 0.91326 | 0.866 |
Time course 0hI-0hNI | 1.05016 | 0.833 |
Time course 12hI-12hNI | 1.10547 | 0.293 |
Time course 36hI-36hNI | 1.5384 | 0.005 |
Time course 60hI-60hNI | 2.32468 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09195 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.98772 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9568 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07204 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87297 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83356 | 1 |
Manapal/WT (break) | 0.94748 | 1 |
Manapal/WT (red) | 0.79811 | 0.242 |
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