Expression of 1-1-1.2.16.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10186 | 0.561 |
27DAP/17DAP | 0.9379 | 0.892 |
39DAP/27DAP | 1.04684 | 1 |
41DAP/39DAP | 1.2546 | 0.437 |
42DAP/41DAP | 1.16383 | 0.873 |
43DAP/42DAP | 0.99154 | 0.937 |
47DAP/43DAP | 0.88397 | 0.603 |
52DAP/47DAP | 1.48171 | 0.401 |
57DAP/52DAP | 0.8027 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94319 | 0.326 |
17DAP/reference | 1.06262 | 0.239 |
27DAP/reference | 0.94236 | 0.304 |
39DAP/reference | 0.94704 | 0.254 |
41DAP/reference | 1.07929 | 0.158 |
42DAP/reference | 0.86077 | 0.011 |
43DAP/reference | 1.03243 | 0.812 |
47DAP/reference | 0.8996 | 0.004 |
52DAP/reference | 0.89376 | 0.06 |
57DAP/reference | 0.84127 | 0.049 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99394 | 0.847 |
27DAP/17DAP | 1.14463 | 0.65 |
39DAP/27DAP | 1.11394 | 0.505 |
41DAP/39DAP | 0.9558 | 0.893 |
42DAP/41DAP | 1.1 | 0.425 |
43DAP/42DAP | 1.11807 | 0.23 |
47DAP/43DAP | 1.0814 | 0.61 |
52DAP/47DAP | 1.02573 | 0.915 |
57DAP/52DAP | 1.10464 | 0.574 |
57DAP/7DAP | 1.08847 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86721 | 0.115 |
17DAP/reference | 0.86671 | 0.02 |
27DAP/reference | 0.84283 | 0.016 |
39DAP/reference | 0.93728 | 0.064 |
41DAP/reference | 0.84188 | 0.032 |
42DAP/reference | 0.87749 | 0.01 |
43DAP/reference | 0.84391 | 0.016 |
47DAP/reference | 0.99432 | 1 |
52DAP/reference | 0.8792 | 0.115 |
57DAP/reference | 0.86957 | 0.041 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14138 | 0.258 |
17DAP/reference | 0.95685 | 0.378 |
27DAP/reference | 0.85835 | 0.035 |
39DAP/reference | 0.95089 | 0.235 |
41DAP/reference | 0.8558 | 0.042 |
42DAP/reference | 0.79267 | 0.042 |
43DAP/reference | 1.07678 | 0.457 |
47DAP/reference | 0.83665 | 0.012 |
52DAP/reference | 0.96441 | 0.22 |
57DAP/reference | 1.04778 | 0.786 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87521 | 0.087 |
17DAP/reference | 0.97485 | 0.624 |
27DAP/reference | 0.83993 | 0.025 |
39DAP/reference | 0.87568 | 0.033 |
41DAP/reference | 0.8948 | 0.086 |
42DAP/reference | 0.87576 | 0.071 |
43DAP/reference | 0.83897 | 0.043 |
47DAP/reference | 0.976 | 0.494 |
52DAP/reference | 0.89645 | 0.334 |
57DAP/reference | 0.80399 | 0.035 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00014 | 1 |
26DAP/20DAP | 1.00105 | 1 |
34DAP/26DAP | 0.91187 | 0.783 |
51DAP/34DAP | 0.888 | 0.482 |
52DAP/51DAP | 0.98399 | 1 |
53DAP/52DAP | 0.92991 | 0.684 |
55DAP/53DAP | 1.25021 | 0.387 |
57DAP/55DAP | 0.92812 | 0.698 |
62DAP/57DAP | 1.29141 | 0.01 |
68DAP/62DAP | 0.79589 | 0.087 |
68DAP/14DAP | 0.94616 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97572 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94962 | 0.618 |
Mature Green Tomato/Ripe Tomato | 1.2031 | 0.237 |
Immature Eggplant/Mature Eggplant | 1.30944 | 0.056 |
Ripe Pepper/Ripe Tomato | 0.50147 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.67028 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09858 | 0.877 |
1-1-2/M82 | 0.93463 | 1 |
12-2/M82 | 0.9521 | 0.955 |
12-4/M82 | 1.06422 | |
1-3/M82 | 0.77918 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98561 | 0.223 |
3-2/M82 | 0.73839 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.95481 | 1 |
4-3/M82 | 1.02264 | 1 |
5-3/M82 | 0.90103 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.20206 | |
7-1/M82 | 0.85619 | |
7-2/M82 | 1.01186 | 1 |
9-3-2/M82 | 0.82243 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14654 | |
IL2-6/WTpooled | 0.88463 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01813 | 1 |
IL12-4/WTpooled | 1.05728 | 0.891 |
IL1-4/WTpooled | 1.06598 | 1 |
WT/WTpooled | 0.90776 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04116 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99983 | 1 |
DC3000/delta hrp 6h | 0.99983 | 0.95 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.92491 | 0.285 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.69783 | 0.063 |
DC3000 delta B/DC3000 delta AB | 1.07916 | 0.472 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88431 | 1 |
Exp 36h | 1.31359 | 1 |
Exp 60h | 1.37533 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01322 | 1 |
Var 0h | 0.76941 | 1 |
Var 12h I row2-row1 | 1.05053 | 0.58 |
Var 12h NI row2-row1 | 0.87996 | 0.488 |
Var 36h I row2-row1 | 0.76637 | 1 |
Var 36h NI row2-row1 | 1.05648 | 1 |
Var 60h I row2-row1 | 1.16056 | 0.562 |
Var 60h NI row2-row1 | 1.19185 | 0.904 |
Time course 0hI-0hNI | 1.06556 | 0.719 |
Time course 12hI-12hNI | 1.02344 | 0.803 |
Time course 36hI-36hNI | 1.05267 | 0.248 |
Time course 60hI-60hNI | 1.09928 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05294 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 0.92002 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.0151 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03229 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80969 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81036 | 0.172 |
Manapal/WT (break) | 0.7793 | 0.333 |
Manapal/WT (red) | 0.85965 | 0.36 |
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