Expression of 1-1-1.2.16.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.857580.427
27DAP/17DAP2.003540.408
39DAP/27DAP1.064470.985
41DAP/39DAP1.092090.994
42DAP/41DAP0.694770.774
43DAP/42DAP1.127870.991
47DAP/43DAP1.038980.972
52DAP/47DAP0.86120.682
57DAP/52DAP1.367780.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.007120.771
17DAP/reference1.019110.787
27DAP/reference1.055370.759
39DAP/reference1.042910.262
41DAP/reference1.042290.714
42DAP/reference0.826530.004
43DAP/reference0.967870.631
47DAP/reference0.884050.098
52DAP/reference0.979760.53
57DAP/reference1.193960.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.007340.801
27DAP/17DAP0.928940.854
39DAP/27DAP1.217190.707
41DAP/39DAP1.218240.837
42DAP/41DAP0.785190.256
43DAP/42DAP1.058030.991
47DAP/43DAP0.989320.843
52DAP/47DAP0.844550.857
57DAP/52DAP1.043960.804
57DAP/7DAP1.084741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.817310.108
17DAP/reference0.931290.192
27DAP/reference1.09120.371
39DAP/reference0.735620.043
41DAP/reference0.742030.052
42DAP/reference0.914760.235
43DAP/reference1.050121
47DAP/reference0.760690.066
52DAP/reference0.904230.332
57DAP/reference0.797940.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.826010.129
17DAP/reference0.911870.287
27DAP/reference0.971490.483
39DAP/reference0.940510.37
41DAP/reference1.05960.562
42DAP/reference0.989040.594
43DAP/reference1.050950.863
47DAP/reference1.070420.572
52DAP/reference0.769110.02
57DAP/reference0.656320.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.778750.061
17DAP/reference0.899880.243
27DAP/reference1.074481
39DAP/reference0.912610.147
41DAP/reference1.0111
42DAP/reference0.958610.445
43DAP/reference0.913480.226
47DAP/reference0.998450.646
52DAP/reference0.841350.125
57DAP/reference1.159090.175

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.407870.878
26DAP/20DAP0.52831
34DAP/26DAP2.68270.542
51DAP/34DAP1.437340.326
52DAP/51DAP0.6213
53DAP/52DAP0.715120.307
55DAP/53DAP1.298380.842
57DAP/55DAP0.998891
62DAP/57DAP1.04361
68DAP/62DAP1.619960.155
68DAP/14DAP1.549250.08

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.7034
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.258040.365
IL2-6/WTpooled1.163730.395
IL7-5/WTpooled0.49487
IL7-3/WTpooled1.060891
IL12-4/WTpooled1.152640.624
IL1-4/WTpooled0.967350.834
WT/WTpooled1.06921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.774621

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064330.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.96630.031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.39412
DC3000 delta B/DC3000 delta AB2.76471

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.131241
Exp 36h1.40470.693
Exp 60h1.164181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.097821
Var 0h1.038861
Var 12h I row2-row11.263260.196
Var 12h NI row2-row11.510850.649
Var 36h I row2-row10.820341
Var 36h NI row2-row11.030091
Var 60h I row2-row10.884940.439
Var 60h NI row2-row10.821411
Time course 0hI-0hNI1.025110.852
Time course 12hI-12hNI2.146120.004
Time course 36hI-36hNI1.561670.006
Time course 60hI-60hNI1.33260.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.913171
transgenic ySAMdc/azygous control (red)1.206330.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996930.858

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.089611

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.880360.333
Manapal/WT (red)0.844690.503