Expression of 1-1-1.2.16.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85758 | 0.427 |
27DAP/17DAP | 2.00354 | 0.408 |
39DAP/27DAP | 1.06447 | 0.985 |
41DAP/39DAP | 1.09209 | 0.994 |
42DAP/41DAP | 0.69477 | 0.774 |
43DAP/42DAP | 1.12787 | 0.991 |
47DAP/43DAP | 1.03898 | 0.972 |
52DAP/47DAP | 0.8612 | 0.682 |
57DAP/52DAP | 1.36778 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00712 | 0.771 |
17DAP/reference | 1.01911 | 0.787 |
27DAP/reference | 1.05537 | 0.759 |
39DAP/reference | 1.04291 | 0.262 |
41DAP/reference | 1.04229 | 0.714 |
42DAP/reference | 0.82653 | 0.004 |
43DAP/reference | 0.96787 | 0.631 |
47DAP/reference | 0.88405 | 0.098 |
52DAP/reference | 0.97976 | 0.53 |
57DAP/reference | 1.19396 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00734 | 0.801 |
27DAP/17DAP | 0.92894 | 0.854 |
39DAP/27DAP | 1.21719 | 0.707 |
41DAP/39DAP | 1.21824 | 0.837 |
42DAP/41DAP | 0.78519 | 0.256 |
43DAP/42DAP | 1.05803 | 0.991 |
47DAP/43DAP | 0.98932 | 0.843 |
52DAP/47DAP | 0.84455 | 0.857 |
57DAP/52DAP | 1.04396 | 0.804 |
57DAP/7DAP | 1.08474 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81731 | 0.108 |
17DAP/reference | 0.93129 | 0.192 |
27DAP/reference | 1.0912 | 0.371 |
39DAP/reference | 0.73562 | 0.043 |
41DAP/reference | 0.74203 | 0.052 |
42DAP/reference | 0.91476 | 0.235 |
43DAP/reference | 1.05012 | 1 |
47DAP/reference | 0.76069 | 0.066 |
52DAP/reference | 0.90423 | 0.332 |
57DAP/reference | 0.79794 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82601 | 0.129 |
17DAP/reference | 0.91187 | 0.287 |
27DAP/reference | 0.97149 | 0.483 |
39DAP/reference | 0.94051 | 0.37 |
41DAP/reference | 1.0596 | 0.562 |
42DAP/reference | 0.98904 | 0.594 |
43DAP/reference | 1.05095 | 0.863 |
47DAP/reference | 1.07042 | 0.572 |
52DAP/reference | 0.76911 | 0.02 |
57DAP/reference | 0.65632 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77875 | 0.061 |
17DAP/reference | 0.89988 | 0.243 |
27DAP/reference | 1.07448 | 1 |
39DAP/reference | 0.91261 | 0.147 |
41DAP/reference | 1.011 | 1 |
42DAP/reference | 0.95861 | 0.445 |
43DAP/reference | 0.91348 | 0.226 |
47DAP/reference | 0.99845 | 0.646 |
52DAP/reference | 0.84135 | 0.125 |
57DAP/reference | 1.15909 | 0.175 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.40787 | 0.878 |
26DAP/20DAP | 0.52831 | |
34DAP/26DAP | 2.6827 | 0.542 |
51DAP/34DAP | 1.43734 | 0.326 |
52DAP/51DAP | 0.6213 | |
53DAP/52DAP | 0.71512 | 0.307 |
55DAP/53DAP | 1.29838 | 0.842 |
57DAP/55DAP | 0.99889 | 1 |
62DAP/57DAP | 1.0436 | 1 |
68DAP/62DAP | 1.61996 | 0.155 |
68DAP/14DAP | 1.54925 | 0.08 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.7034 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.25804 | 0.365 |
IL2-6/WTpooled | 1.16373 | 0.395 |
IL7-5/WTpooled | 0.49487 | |
IL7-3/WTpooled | 1.06089 | 1 |
IL12-4/WTpooled | 1.15264 | 0.624 |
IL1-4/WTpooled | 0.96735 | 0.834 |
WT/WTpooled | 1.0692 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.77462 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06433 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.9663 | 0.031 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.39412 | |
DC3000 delta B/DC3000 delta AB | 2.76471 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13124 | 1 |
Exp 36h | 1.4047 | 0.693 |
Exp 60h | 1.16418 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.09782 | 1 |
Var 0h | 1.03886 | 1 |
Var 12h I row2-row1 | 1.26326 | 0.196 |
Var 12h NI row2-row1 | 1.51085 | 0.649 |
Var 36h I row2-row1 | 0.82034 | 1 |
Var 36h NI row2-row1 | 1.03009 | 1 |
Var 60h I row2-row1 | 0.88494 | 0.439 |
Var 60h NI row2-row1 | 0.82141 | 1 |
Time course 0hI-0hNI | 1.02511 | 0.852 |
Time course 12hI-12hNI | 2.14612 | 0.004 |
Time course 36hI-36hNI | 1.56167 | 0.006 |
Time course 60hI-60hNI | 1.3326 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.91317 | 1 |
transgenic ySAMdc/azygous control (red) | 1.20633 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99693 | 0.858 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08961 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.88036 | 0.333 |
Manapal/WT (red) | 0.84469 | 0.503 |
|
|