Expression of 1-1-1.2.17.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06689 | 0.878 |
27DAP/17DAP | 1.11847 | 0.872 |
39DAP/27DAP | 0.69593 | 0.392 |
41DAP/39DAP | 1.5235 | 0.464 |
42DAP/41DAP | 1.39475 | 0.751 |
43DAP/42DAP | 0.92181 | 0.813 |
47DAP/43DAP | 0.87816 | 0.568 |
52DAP/47DAP | 1.28228 | 0.696 |
57DAP/52DAP | 0.89102 | 0.849 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15678 | 0.057 |
17DAP/reference | 1.24065 | 0.057 |
27DAP/reference | 1.30528 | 0.179 |
39DAP/reference | 1.2612 | 0.318 |
41DAP/reference | 1.52424 | 0.014 |
42DAP/reference | 1.26717 | 0.001 |
43DAP/reference | 0.99666 | 0.861 |
47DAP/reference | 1.14649 | 0.009 |
52DAP/reference | 1.06385 | 0.766 |
57DAP/reference | 1.06605 | 0.901 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94117 | 0.509 |
27DAP/17DAP | 1.09392 | 0.645 |
39DAP/27DAP | 1.05568 | 0.558 |
41DAP/39DAP | 1.09834 | 0.674 |
42DAP/41DAP | 0.96145 | 0.687 |
43DAP/42DAP | 0.94926 | 0.447 |
47DAP/43DAP | 0.99566 | 0.971 |
52DAP/47DAP | 1.05129 | 0.823 |
57DAP/52DAP | 1.00779 | 1 |
57DAP/7DAP | 1.14264 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90251 | 0.146 |
17DAP/reference | 0.92243 | 0.082 |
27DAP/reference | 0.98487 | 0.462 |
39DAP/reference | 0.92931 | 0.049 |
41DAP/reference | 0.90472 | 0.037 |
42DAP/reference | 0.99292 | 0.612 |
43DAP/reference | 0.86207 | 0.015 |
47DAP/reference | 0.90095 | 0.222 |
52DAP/reference | 0.85375 | 0.033 |
57DAP/reference | 0.80848 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10032 | 0.62 |
17DAP/reference | 1.60408 | 0.012 |
27DAP/reference | 1.29793 | 0.126 |
39DAP/reference | 1.49931 | 0.026 |
41DAP/reference | 1.20856 | 0.126 |
42DAP/reference | 1.47482 | 0.01 |
43DAP/reference | 1.7217 | 0.013 |
47DAP/reference | 1.49685 | 0.008 |
52DAP/reference | 1.4366 | 0.006 |
57DAP/reference | 1.71285 | 0.029 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12861 | 0.882 |
17DAP/reference | 1.06398 | 0.641 |
27DAP/reference | 0.85322 | 0.031 |
39DAP/reference | 0.96326 | 0.464 |
41DAP/reference | 1.10199 | 0.818 |
42DAP/reference | 0.99463 | 0.816 |
43DAP/reference | 0.97067 | 0.503 |
47DAP/reference | 1.17927 | 0.239 |
52DAP/reference | 0.86887 | 0.148 |
57DAP/reference | 1.00916 | 0.79 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.58078 | 0.733 |
26DAP/20DAP | 0.97453 | 1 |
34DAP/26DAP | 0.98525 | 0.991 |
51DAP/34DAP | 0.98882 | 0.901 |
52DAP/51DAP | 0.95376 | 1 |
53DAP/52DAP | 1.0388 | 0.944 |
55DAP/53DAP | 1.04658 | 0.898 |
57DAP/55DAP | 0.95035 | 0.765 |
62DAP/57DAP | 1.55633 | 0.057 |
68DAP/62DAP | 0.7366 | 0.245 |
68DAP/14DAP | 0.78236 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87972 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.79639 | 0.256 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.59002 | |
Mature Eggplant/Ripe Tomato | 0.82083 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97937 | 0.944 |
1-1-2/M82 | 0.82153 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.63333 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01621 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.60358 | |
4-3-2/M82 | 0.9101 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.8796 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.23755 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.85761 | 0.796 |
9-3-2/M82 | 0.90307 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.53961 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.74765 | 1 |
IL7-3/WTpooled | 0.94692 | 1 |
IL12-4/WTpooled | 1.14488 | 0.624 |
IL1-4/WTpooled | 0.98449 | 1 |
WT/WTpooled | 1.24933 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.70535 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94826 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.18737 | 1 |
DC3000/delta hrp 24h | 1.07562 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12936 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.07639 | 0.503 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99929 | 1 |
Var 0h | 1.15705 | 0.98 |
Var 12h I row2-row1 | 1.0981 | 0.544 |
Var 12h NI row2-row1 | 0.94278 | 0.82 |
Var 36h I row2-row1 | 0.87889 | 0.805 |
Var 36h NI row2-row1 | 0.83968 | 0.469 |
Var 60h I row2-row1 | 1.35906 | 0.562 |
Var 60h NI row2-row1 | 1.06646 | 1 |
Time course 0hI-0hNI | 0.96014 | 0.812 |
Time course 12hI-12hNI | 1.05264 | 0.738 |
Time course 36hI-36hNI | 1.02233 | 0.881 |
Time course 60hI-60hNI | 1.34622 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19356 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.00003 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26049 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.30258 | 0.123 |
Manapal/WT (red) | N/A | N/A |
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