Expression of 1-1-1.2.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.066890.878
27DAP/17DAP1.118470.872
39DAP/27DAP0.695930.392
41DAP/39DAP1.52350.464
42DAP/41DAP1.394750.751
43DAP/42DAP0.921810.813
47DAP/43DAP0.878160.568
52DAP/47DAP1.282280.696
57DAP/52DAP0.891020.849

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.156780.057
17DAP/reference1.240650.057
27DAP/reference1.305280.179
39DAP/reference1.26120.318
41DAP/reference1.524240.014
42DAP/reference1.267170.001
43DAP/reference0.996660.861
47DAP/reference1.146490.009
52DAP/reference1.063850.766
57DAP/reference1.066050.901

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941170.509
27DAP/17DAP1.093920.645
39DAP/27DAP1.055680.558
41DAP/39DAP1.098340.674
42DAP/41DAP0.961450.687
43DAP/42DAP0.949260.447
47DAP/43DAP0.995660.971
52DAP/47DAP1.051290.823
57DAP/52DAP1.007791
57DAP/7DAP1.142641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902510.146
17DAP/reference0.922430.082
27DAP/reference0.984870.462
39DAP/reference0.929310.049
41DAP/reference0.904720.037
42DAP/reference0.992920.612
43DAP/reference0.862070.015
47DAP/reference0.900950.222
52DAP/reference0.853750.033
57DAP/reference0.808480.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.100320.62
17DAP/reference1.604080.012
27DAP/reference1.297930.126
39DAP/reference1.499310.026
41DAP/reference1.208560.126
42DAP/reference1.474820.01
43DAP/reference1.72170.013
47DAP/reference1.496850.008
52DAP/reference1.43660.006
57DAP/reference1.712850.029

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128610.882
17DAP/reference1.063980.641
27DAP/reference0.853220.031
39DAP/reference0.963260.464
41DAP/reference1.101990.818
42DAP/reference0.994630.816
43DAP/reference0.970670.503
47DAP/reference1.179270.239
52DAP/reference0.868870.148
57DAP/reference1.009160.79

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.580780.733
26DAP/20DAP0.974531
34DAP/26DAP0.985250.991
51DAP/34DAP0.988820.901
52DAP/51DAP0.953761
53DAP/52DAP1.03880.944
55DAP/53DAP1.046580.898
57DAP/55DAP0.950350.765
62DAP/57DAP1.556330.057
68DAP/62DAP0.73660.245
68DAP/14DAP0.782360.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.879720.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.796390.256
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.59002
Mature Eggplant/Ripe Tomato0.82083

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.979370.944
1-1-2/M820.821530.804
12-2/M82N/AN/A
12-4/M820.63333
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.01621
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.60358
4-3-2/M820.91011
4-3/M82N/AN/A
5-3/M820.87961
6-2/M82N/AN/A
6-3/M821.23755
7-1/M82N/AN/A
7-2/M820.857610.796
9-3-2/M820.903071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.539610.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.747651
IL7-3/WTpooled0.946921
IL12-4/WTpooled1.144880.624
IL1-4/WTpooled0.984491
WT/WTpooled1.249331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.705350.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.948261
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.187371
DC3000/delta hrp 24h1.075620.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.129360.333
DC3000 delta B/DC3000 delta AB1.076390.503

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999291
Var 0h1.157050.98
Var 12h I row2-row11.09810.544
Var 12h NI row2-row10.942780.82
Var 36h I row2-row10.878890.805
Var 36h NI row2-row10.839680.469
Var 60h I row2-row11.359060.562
Var 60h NI row2-row11.066461
Time course 0hI-0hNI0.960140.812
Time course 12hI-12hNI1.052640.738
Time course 36hI-36hNI1.022330.881
Time course 60hI-60hNI1.346220.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.193560.408
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.000031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.260490.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.302580.123
Manapal/WT (red)N/AN/A