Expression of 1-1-1.2.17.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057390.927
27DAP/17DAP1.13240.847
39DAP/27DAP1.542590.099
41DAP/39DAP0.943550.727
42DAP/41DAP0.91831
43DAP/42DAP1.041320.937
47DAP/43DAP0.807880.36
52DAP/47DAP1.997240.284
57DAP/52DAP0.964960.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.076340.76
17DAP/reference0.886590.18
27DAP/reference1.298150.271
39DAP/reference0.900870.284
41DAP/reference0.744690.01
42DAP/reference1.024930.469
43DAP/reference1.056340.838
47DAP/reference1.204230.91
52DAP/reference2.014450.045
57DAP/reference1.635510.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.923460.484
27DAP/17DAP0.895870.475
39DAP/27DAP0.995651
41DAP/39DAP1.223590.07
42DAP/41DAP0.838450.106
43DAP/42DAP1.037250.746
47DAP/43DAP1.140350.331
52DAP/47DAP1.01811
57DAP/52DAP2.007810.049
57DAP/7DAP1.344620.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926350.246
17DAP/reference0.929840.167
27DAP/reference1.06970.453
39DAP/reference0.88630.056
41DAP/reference1.126820.445
42DAP/reference0.897970.248
43DAP/reference1.562990.07
47DAP/reference1.299160.024
52DAP/reference0.939560.332
57DAP/reference0.913060.162

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.71510.072
17DAP/reference0.638090.004
27DAP/reference0.964390.467
39DAP/reference1.354670.042
41DAP/reference1.169070.513
42DAP/reference1.240770.01
43DAP/reference0.798280.17
47DAP/reference0.860980.081
52DAP/reference1.023090.988
57DAP/reference0.840410.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955670.391
17DAP/reference0.890030.417
27DAP/reference0.834970.113
39DAP/reference1.006911
41DAP/reference0.912940.331
42DAP/reference1.207920.51
43DAP/reference1.195320.572
47DAP/reference1.287160.655
52DAP/reference0.904380.444
57DAP/reference1.817860.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.250840.966
26DAP/20DAP1.066791
34DAP/26DAP1.096521
51DAP/34DAP1.509070.387
52DAP/51DAP0.808651
53DAP/52DAP1.785760.026
55DAP/53DAP0.843650.149
57DAP/55DAP0.830050.36
62DAP/57DAP1.283940.8
68DAP/62DAP4.455120.058
68DAP/14DAP5.590790.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.753810.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.838890.256
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.60988
Mature Eggplant/Ripe Tomato0.313940.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.719450.634
1-1-2/M821.270781
12-2/M821.250681
12-4/M820.703470.272
1-3/M821.186960.248
2-1-1/M820.804750.683
2-1/M820.752530.74
2-6/M820.79160.501
3-2/M82N/AN/A
4-1-1/M820.75914
4-1/M820.81702
4-3-2/M820.779630.698
4-3/M820.869111
5-3/M820.912981
6-2/M820.9635
6-3/M821.12559
7-1/M82N/AN/A
7-2/M820.93731
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.77091
IL2-6/WTpooled0.721470.473
IL7-5/WTpooled0.09563
IL7-3/WTpooled1.042321
IL12-4/WTpooled1.136640.673
IL1-4/WTpooled0.93070.834
WT/WTpooled1.039911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.089111

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.911991
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.83238
DC3000/delta hrp 24h0.922380.363

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.96682
DC3000 delta B/DC3000 delta AB1.797630.2

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020571
Var 0h0.586840.305
Var 12h I row2-row11.16050.506
Var 12h NI row2-row11.08211
Var 36h I row2-row11.056681
Var 36h NI row2-row11.172951
Var 60h I row2-row10.897650.306
Var 60h NI row2-row10.860550.483
Time course 0hI-0hNI1.052650.574
Time course 12hI-12hNI0.981610.874
Time course 36hI-36hNI1.067330.316
Time course 60hI-60hNI1.444310.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.664560.251
transgenic ySAMdc/azygous control (red)0.683461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.119731

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.110980.183
Manapal/WT (red)1.109431