Expression of 1-1-1.2.17.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05739 | 0.927 |
27DAP/17DAP | 1.1324 | 0.847 |
39DAP/27DAP | 1.54259 | 0.099 |
41DAP/39DAP | 0.94355 | 0.727 |
42DAP/41DAP | 0.9183 | 1 |
43DAP/42DAP | 1.04132 | 0.937 |
47DAP/43DAP | 0.80788 | 0.36 |
52DAP/47DAP | 1.99724 | 0.284 |
57DAP/52DAP | 0.96496 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07634 | 0.76 |
17DAP/reference | 0.88659 | 0.18 |
27DAP/reference | 1.29815 | 0.271 |
39DAP/reference | 0.90087 | 0.284 |
41DAP/reference | 0.74469 | 0.01 |
42DAP/reference | 1.02493 | 0.469 |
43DAP/reference | 1.05634 | 0.838 |
47DAP/reference | 1.20423 | 0.91 |
52DAP/reference | 2.01445 | 0.045 |
57DAP/reference | 1.63551 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92346 | 0.484 |
27DAP/17DAP | 0.89587 | 0.475 |
39DAP/27DAP | 0.99565 | 1 |
41DAP/39DAP | 1.22359 | 0.07 |
42DAP/41DAP | 0.83845 | 0.106 |
43DAP/42DAP | 1.03725 | 0.746 |
47DAP/43DAP | 1.14035 | 0.331 |
52DAP/47DAP | 1.0181 | 1 |
57DAP/52DAP | 2.00781 | 0.049 |
57DAP/7DAP | 1.34462 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92635 | 0.246 |
17DAP/reference | 0.92984 | 0.167 |
27DAP/reference | 1.0697 | 0.453 |
39DAP/reference | 0.8863 | 0.056 |
41DAP/reference | 1.12682 | 0.445 |
42DAP/reference | 0.89797 | 0.248 |
43DAP/reference | 1.56299 | 0.07 |
47DAP/reference | 1.29916 | 0.024 |
52DAP/reference | 0.93956 | 0.332 |
57DAP/reference | 0.91306 | 0.162 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7151 | 0.072 |
17DAP/reference | 0.63809 | 0.004 |
27DAP/reference | 0.96439 | 0.467 |
39DAP/reference | 1.35467 | 0.042 |
41DAP/reference | 1.16907 | 0.513 |
42DAP/reference | 1.24077 | 0.01 |
43DAP/reference | 0.79828 | 0.17 |
47DAP/reference | 0.86098 | 0.081 |
52DAP/reference | 1.02309 | 0.988 |
57DAP/reference | 0.84041 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95567 | 0.391 |
17DAP/reference | 0.89003 | 0.417 |
27DAP/reference | 0.83497 | 0.113 |
39DAP/reference | 1.00691 | 1 |
41DAP/reference | 0.91294 | 0.331 |
42DAP/reference | 1.20792 | 0.51 |
43DAP/reference | 1.19532 | 0.572 |
47DAP/reference | 1.28716 | 0.655 |
52DAP/reference | 0.90438 | 0.444 |
57DAP/reference | 1.81786 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25084 | 0.966 |
26DAP/20DAP | 1.06679 | 1 |
34DAP/26DAP | 1.09652 | 1 |
51DAP/34DAP | 1.50907 | 0.387 |
52DAP/51DAP | 0.80865 | 1 |
53DAP/52DAP | 1.78576 | 0.026 |
55DAP/53DAP | 0.84365 | 0.149 |
57DAP/55DAP | 0.83005 | 0.36 |
62DAP/57DAP | 1.28394 | 0.8 |
68DAP/62DAP | 4.45512 | 0.058 |
68DAP/14DAP | 5.59079 | 0.026 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.75381 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.83889 | 0.256 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.60988 | |
Mature Eggplant/Ripe Tomato | 0.31394 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.71945 | 0.634 |
1-1-2/M82 | 1.27078 | 1 |
12-2/M82 | 1.25068 | 1 |
12-4/M82 | 0.70347 | 0.272 |
1-3/M82 | 1.18696 | 0.248 |
2-1-1/M82 | 0.80475 | 0.683 |
2-1/M82 | 0.75253 | 0.74 |
2-6/M82 | 0.7916 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.75914 | |
4-1/M82 | 0.81702 | |
4-3-2/M82 | 0.77963 | 0.698 |
4-3/M82 | 0.86911 | 1 |
5-3/M82 | 0.91298 | 1 |
6-2/M82 | 0.9635 | |
6-3/M82 | 1.12559 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.93731 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77091 | |
IL2-6/WTpooled | 0.72147 | 0.473 |
IL7-5/WTpooled | 0.09563 | |
IL7-3/WTpooled | 1.04232 | 1 |
IL12-4/WTpooled | 1.13664 | 0.673 |
IL1-4/WTpooled | 0.9307 | 0.834 |
WT/WTpooled | 1.03991 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08911 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91199 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.83238 | |
DC3000/delta hrp 24h | 0.92238 | 0.363 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96682 | |
DC3000 delta B/DC3000 delta AB | 1.79763 | 0.2 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02057 | 1 |
Var 0h | 0.58684 | 0.305 |
Var 12h I row2-row1 | 1.1605 | 0.506 |
Var 12h NI row2-row1 | 1.0821 | 1 |
Var 36h I row2-row1 | 1.05668 | 1 |
Var 36h NI row2-row1 | 1.17295 | 1 |
Var 60h I row2-row1 | 0.89765 | 0.306 |
Var 60h NI row2-row1 | 0.86055 | 0.483 |
Time course 0hI-0hNI | 1.05265 | 0.574 |
Time course 12hI-12hNI | 0.98161 | 0.874 |
Time course 36hI-36hNI | 1.06733 | 0.316 |
Time course 60hI-60hNI | 1.44431 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.66456 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.68346 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11973 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.11098 | 0.183 |
Manapal/WT (red) | 1.10943 | 1 |
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