Expression of 1-1-1.2.18.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.224860.452
27DAP/17DAP1.2510.761
39DAP/27DAP1.275960.873
41DAP/39DAP0.984510.789
42DAP/41DAP1.025781
43DAP/42DAP0.863450.786
47DAP/43DAP1.198440.659
52DAP/47DAP1.379970.405
57DAP/52DAP0.842530.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.988290.616
17DAP/reference0.960230.368
27DAP/reference1.018940.782
39DAP/reference1.002330.889
41DAP/reference0.970650.267
42DAP/reference1.03920.398
43DAP/reference0.928090.17
47DAP/reference1.070940.039
52DAP/reference1.134620.069
57DAP/reference1.011530.927

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01420.899
27DAP/17DAP1.037590.9
39DAP/27DAP0.99841
41DAP/39DAP0.991231
42DAP/41DAP0.97390.777
43DAP/42DAP0.964290.875
47DAP/43DAP1.003490.973
52DAP/47DAP0.984810.907
57DAP/52DAP1.080320.589
57DAP/7DAP1.015091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.393610.049
17DAP/reference1.792360.016
27DAP/reference1.316330.035
39DAP/reference1.451460.12
41DAP/reference1.627980.012
42DAP/reference1.690820.009
43DAP/reference1.951910.007
47DAP/reference1.419270.136
52DAP/reference1.780880.007
57DAP/reference1.713730.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026660.704
17DAP/reference1.031420.674
27DAP/reference0.980210.576
39DAP/reference1.100280.263
41DAP/reference1.522160.106
42DAP/reference1.11350.19
43DAP/reference0.92950.404
47DAP/reference1.020230.556
52DAP/reference1.043770.114
57DAP/reference1.011411

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.297990.167
17DAP/reference1.129780.738
27DAP/reference1.799790.022
39DAP/reference1.47790.008
41DAP/reference1.365930.013
42DAP/reference1.173710.204
43DAP/reference1.442140.026
47DAP/reference1.010730.754
52DAP/reference1.692430.097
57DAP/reference1.647630.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.951131
26DAP/20DAP0.951060.512
34DAP/26DAP1.026211
51DAP/34DAP1.012080.936
52DAP/51DAP1.001621
53DAP/52DAP0.864730.489
55DAP/53DAP0.893650.619
57DAP/55DAP1.154780.51
62DAP/57DAP1.054270.902
68DAP/62DAP0.831240.609
68DAP/14DAP0.89331

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.027840.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.216910.287
Mature Green Tomato/Ripe Tomato1.514910.022
Immature Eggplant/Mature Eggplant0.976740.912
Ripe Pepper/Ripe Tomato0.661830.224
Mature Eggplant/Ripe Tomato0.609351

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978650.961
1-1-2/M821.00021
12-2/M820.929480.955
12-4/M821.19551
1-3/M821.03326
2-1-1/M821.083730.689
2-1/M82N/AN/A
2-6/M821.169530.505
3-2/M821.379550.84
4-1-1/M820.919381
4-1/M820.927881
4-3-2/M820.707280.698
4-3/M821.116571
5-3/M821.033861
6-2/M820.931751
6-3/M821.026221
7-1/M821.48478
7-2/M821.099870.299
9-3-2/M820.751330.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.315820.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.11656
IL7-3/WTpooled1.29972
IL12-4/WTpooled1.212160.839
IL1-4/WTpooled1.039131
WT/WTpooled0.698181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.136290.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.955521
DC3000/delta hrp 6h1.060221
DC3000/delta hrp 12h0.76104
DC3000/delta hrp 24h1.191430.232

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.297720.042
DC3000 delta B/DC3000 delta AB1.216290.175

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.965421
Exp 36h1.511920.693
Exp 60h1.595340.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023181
Var 0h0.994061
Var 12h I row2-row11.118910.283
Var 12h NI row2-row10.908330.494
Var 36h I row2-row10.945781
Var 36h NI row2-row10.980990.791
Var 60h I row2-row10.923210.306
Var 60h NI row2-row11.079231
Time course 0hI-0hNI1.063420.833
Time course 12hI-12hNI1.063370.633
Time course 36hI-36hNI1.388660.005
Time course 60hI-60hNI2.125960.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97410.32
transgenic ySAMdc/azygous control (breaker)1.494360.178
transgenic ySAMdc/azygous control (red)1.021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007620.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.072891

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.930741
Manapal/WT (break)0.922990.299
Manapal/WT (red)0.954560.728