Expression of 1-1-1.2.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72273 | 0.11 |
27DAP/17DAP | 1.16661 | 0.849 |
39DAP/27DAP | 1.30439 | 0.553 |
41DAP/39DAP | 1.07667 | 0.663 |
42DAP/41DAP | 1.129 | 0.937 |
43DAP/42DAP | 1.01951 | 0.931 |
47DAP/43DAP | 0.89784 | 0.652 |
52DAP/47DAP | 1.26947 | 0.819 |
57DAP/52DAP | 0.91856 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20867 | 0.032 |
17DAP/reference | 1.2219 | 0.015 |
27DAP/reference | 1.10047 | 0.205 |
39DAP/reference | 1.13658 | 0.318 |
41DAP/reference | 1.39445 | 0.018 |
42DAP/reference | 1.27095 | 0.001 |
43DAP/reference | 1.01118 | 0.942 |
47DAP/reference | 1.22368 | 0.001 |
52DAP/reference | 1.27383 | 0.036 |
57DAP/reference | 0.9098 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0731 | 0.547 |
27DAP/17DAP | 1.29767 | |
39DAP/27DAP | 1.00185 | 0.874 |
41DAP/39DAP | 0.96433 | 0.875 |
42DAP/41DAP | 1.07681 | 0.708 |
43DAP/42DAP | 1.00528 | 0.83 |
47DAP/43DAP | 1.03034 | 0.865 |
52DAP/47DAP | 0.95348 | 0.77 |
57DAP/52DAP | 0.95569 | 0.514 |
57DAP/7DAP | 0.92516 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44414 | 0.311 |
17DAP/reference | 3.58186 | 0.007 |
27DAP/reference | 2.72159 | 0.006 |
39DAP/reference | 3.48919 | 0.005 |
41DAP/reference | 3.57037 | 0.012 |
42DAP/reference | 4.37823 | 0.007 |
43DAP/reference | 5.01413 | 0.006 |
47DAP/reference | 2.89546 | 0.279 |
52DAP/reference | 4.22305 | 0.007 |
57DAP/reference | 3.36417 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22589 | 0.077 |
17DAP/reference | 1.25884 | 0.107 |
27DAP/reference | 1.31958 | 0.042 |
39DAP/reference | 1.46879 | 0.013 |
41DAP/reference | 1.17537 | 0.277 |
42DAP/reference | 1.41651 | 0.086 |
43DAP/reference | 0.88155 | 0.37 |
47DAP/reference | 1.40475 | 0.008 |
52DAP/reference | 1.38594 | 0.006 |
57DAP/reference | 1.36248 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.91946 | 0.015 |
17DAP/reference | 1.53561 | 0.531 |
27DAP/reference | 3.9369 | 0.02 |
39DAP/reference | 3.8445 | 0.013 |
41DAP/reference | 2.42984 | 0.027 |
42DAP/reference | 3.18174 | 0.009 |
43DAP/reference | 3.36636 | 0.014 |
47DAP/reference | 1.05798 | 0.562 |
52DAP/reference | 4.24995 | 0.038 |
57DAP/reference | 2.0959 | 0.401 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93229 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.97655 | 0.945 |
51DAP/34DAP | 1.26742 | 0.215 |
52DAP/51DAP | 0.64834 | 0.151 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.09632 | 0.911 |
57DAP/55DAP | 1.20487 | 0.474 |
62DAP/57DAP | 1.07422 | 0.935 |
68DAP/62DAP | 0.89225 | 0.722 |
68DAP/14DAP | 0.80603 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98554 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9636 | 0.591 |
Mature Green Tomato/Ripe Tomato | 0.3097 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.3945 | 0.054 |
Ripe Pepper/Ripe Tomato | 0.86495 | 1 |
Mature Eggplant/Ripe Tomato | 0.83955 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97978 | 0.961 |
1-1-2/M82 | 1.05741 | 1 |
12-2/M82 | 0.98469 | 1 |
12-4/M82 | 0.97691 | 0.619 |
1-3/M82 | 1.03879 | 1 |
2-1-1/M82 | 0.98317 | 1 |
2-1/M82 | 1.46131 | 1 |
2-6/M82 | 0.84215 | 1 |
3-2/M82 | 1.00969 | |
4-1-1/M82 | 1.04167 | 0.966 |
4-1/M82 | 0.85187 | |
4-3-2/M82 | 1.04601 | |
4-3/M82 | 1.0029 | 1 |
5-3/M82 | 1.03429 | 0.455 |
6-2/M82 | 1.01139 | 1 |
6-3/M82 | 0.96309 | 1 |
7-1/M82 | 0.95491 | 1 |
7-2/M82 | 1.0787 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.99076 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92 | 1 |
IL12-4/WTpooled | 1.0649 | 1 |
IL1-4/WTpooled | 0.88114 | |
WT/WTpooled | 1.09565 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09998 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10692 | 0.846 |
DC3000/delta hrp 6h | 0.86606 | 0.95 |
DC3000/delta hrp 12h | 1.04508 | 1 |
DC3000/delta hrp 24h | 1.02995 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32891 | 0.05 |
DC3000 delta B/DC3000 delta AB | 1.13118 | 0.353 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99947 | 1 |
Exp 36h | 1.20109 | 1 |
Exp 60h | 1.32483 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99867 | 1 |
Var 0h | 0.8332 | 0.933 |
Var 12h I row2-row1 | 1.09921 | 0.189 |
Var 12h NI row2-row1 | 1.18145 | 1 |
Var 36h I row2-row1 | 0.94844 | 1 |
Var 36h NI row2-row1 | 0.96004 | 0.791 |
Var 60h I row2-row1 | 1.13511 | 1 |
Var 60h NI row2-row1 | 1.27505 | 0.904 |
Time course 0hI-0hNI | 1.06376 | 0.833 |
Time course 12hI-12hNI | 0.99409 | 1 |
Time course 36hI-36hNI | 0.83952 | 0.046 |
Time course 60hI-60hNI | 1.16701 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85535 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 0.78341 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.0408 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96782 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99125 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92005 | 1 |
Manapal/WT (break) | 1.15338 | 1 |
Manapal/WT (red) | 0.64814 | 0.188 |
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