Expression of 1-1-1.2.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08317 | 0.901 |
27DAP/17DAP | 0.84048 | 0.631 |
39DAP/27DAP | 0.91858 | 0.663 |
41DAP/39DAP | 1.45246 | 0.257 |
42DAP/41DAP | 1.26257 | 0.871 |
43DAP/42DAP | 0.95874 | 0.91 |
47DAP/43DAP | 0.80644 | 0.424 |
52DAP/47DAP | 1.47724 | 0.474 |
57DAP/52DAP | 0.98375 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09555 | 0.303 |
17DAP/reference | 1.05912 | 0.08 |
27DAP/reference | 1.16299 | 0.33 |
39DAP/reference | 1.10904 | 0.077 |
41DAP/reference | 1.1326 | 0.145 |
42DAP/reference | 1.05974 | 0.241 |
43DAP/reference | 1.03777 | 0.518 |
47DAP/reference | 0.99492 | 0.636 |
52DAP/reference | 1.08473 | 0.053 |
57DAP/reference | 0.92748 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93247 | 0.526 |
27DAP/17DAP | 0.96366 | 0.821 |
39DAP/27DAP | 1.06704 | 0.575 |
41DAP/39DAP | 1.11483 | 0.781 |
42DAP/41DAP | 1.18925 | 0.571 |
43DAP/42DAP | 1.07803 | 0.382 |
47DAP/43DAP | 1.06415 | 0.699 |
52DAP/47DAP | 1.00035 | 0.979 |
57DAP/52DAP | 1.00992 | 0.929 |
57DAP/7DAP | 1.11984 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84125 | 0.076 |
17DAP/reference | 0.92203 | 0.108 |
27DAP/reference | 0.9544 | 0.146 |
39DAP/reference | 0.83651 | 0.011 |
41DAP/reference | 0.82585 | 0.021 |
42DAP/reference | 0.84206 | 0.012 |
43DAP/reference | 0.88557 | 0.027 |
47DAP/reference | 0.89373 | 0.222 |
52DAP/reference | 0.85339 | 0.083 |
57DAP/reference | 0.83266 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14082 | 0.141 |
17DAP/reference | 1.18105 | 0.039 |
27DAP/reference | 1.07716 | 0.535 |
39DAP/reference | 1.07441 | 0.571 |
41DAP/reference | 1.02864 | 1 |
42DAP/reference | 1.00331 | 1 |
43DAP/reference | 1.24139 | 0.078 |
47DAP/reference | 1.07595 | 0.218 |
52DAP/reference | 1.18466 | 0.017 |
57DAP/reference | 1.24791 | 0.089 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99077 | 0.653 |
17DAP/reference | 1.05821 | 0.784 |
27DAP/reference | 0.84747 | 0.055 |
39DAP/reference | 0.96528 | 0.504 |
41DAP/reference | 0.91304 | 0.185 |
42DAP/reference | 1.0865 | 0.529 |
43DAP/reference | 0.97432 | 0.545 |
47DAP/reference | 1.17479 | 0.12 |
52DAP/reference | 0.9236 | 0.368 |
57DAP/reference | 1.06706 | 0.933 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03469 | 1 |
26DAP/20DAP | 0.9468 | 0.512 |
34DAP/26DAP | 0.97751 | 0.972 |
51DAP/34DAP | 1.03773 | 0.978 |
52DAP/51DAP | 1.02728 | 0.915 |
53DAP/52DAP | 1.01135 | 1 |
55DAP/53DAP | 1.28959 | 0.236 |
57DAP/55DAP | 0.98886 | 0.891 |
62DAP/57DAP | 1.26349 | 0.034 |
68DAP/62DAP | 0.85565 | 0.378 |
68DAP/14DAP | 1.01924 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97503 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.95252 | |
Mature Green Tomato/Ripe Tomato | 1.10664 | 0.881 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.60184 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.2103 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10388 | 0.877 |
1-1-2/M82 | 0.94693 | 1 |
12-2/M82 | 1.05306 | 1 |
12-4/M82 | 0.91173 | 1 |
1-3/M82 | 0.93073 | |
2-1-1/M82 | 0.82835 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00475 | 1 |
3-2/M82 | 0.83633 | |
4-1-1/M82 | 0.93691 | |
4-1/M82 | 0.85599 | 1 |
4-3-2/M82 | 0.77652 | 0.698 |
4-3/M82 | 0.81004 | 0.509 |
5-3/M82 | 1.0135 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.1695 | |
7-1/M82 | 1.05253 | |
7-2/M82 | 1.02301 | 1 |
9-3-2/M82 | 0.83671 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0851 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.1634 | 1 |
WT/WTpooled | 0.8563 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96345 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05015 | 0.921 |
DC3000/delta hrp 6h | 1.04954 | 1 |
DC3000/delta hrp 12h | 0.9791 | 1 |
DC3000/delta hrp 24h | 1.12916 | 0.243 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.69953 | 0.047 |
DC3000 delta B/DC3000 delta AB | 0.8084 | 0.047 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12242 | 1 |
Exp 36h | 0.94354 | 0.879 |
Exp 60h | 1.02523 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01028 | 1 |
Var 0h | 1.22379 | 0.421 |
Var 12h I row2-row1 | 0.95385 | 0.856 |
Var 12h NI row2-row1 | 1.00532 | 1 |
Var 36h I row2-row1 | 1.02095 | 1 |
Var 36h NI row2-row1 | 1.17492 | 1 |
Var 60h I row2-row1 | 1.15705 | |
Var 60h NI row2-row1 | 1.06392 | 0.4 |
Time course 0hI-0hNI | 1.00114 | 1 |
Time course 12hI-12hNI | 0.91743 | 0.173 |
Time course 36hI-36hNI | 0.84298 | 0.023 |
Time course 60hI-60hNI | 0.50249 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89696 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 1.07133 | 1 |
transgenic ySAMdc/azygous control (red) | 0.95862 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00043 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95445 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75967 | 1 |
Manapal/WT (break) | 1.05471 | 1 |
Manapal/WT (red) | 1.27061 | 0.142 |
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