Expression of 1-1-1.2.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.083170.901
27DAP/17DAP0.840480.631
39DAP/27DAP0.918580.663
41DAP/39DAP1.452460.257
42DAP/41DAP1.262570.871
43DAP/42DAP0.958740.91
47DAP/43DAP0.806440.424
52DAP/47DAP1.477240.474
57DAP/52DAP0.983750.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.095550.303
17DAP/reference1.059120.08
27DAP/reference1.162990.33
39DAP/reference1.109040.077
41DAP/reference1.13260.145
42DAP/reference1.059740.241
43DAP/reference1.037770.518
47DAP/reference0.994920.636
52DAP/reference1.084730.053
57DAP/reference0.927480.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932470.526
27DAP/17DAP0.963660.821
39DAP/27DAP1.067040.575
41DAP/39DAP1.114830.781
42DAP/41DAP1.189250.571
43DAP/42DAP1.078030.382
47DAP/43DAP1.064150.699
52DAP/47DAP1.000350.979
57DAP/52DAP1.009920.929
57DAP/7DAP1.119841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841250.076
17DAP/reference0.922030.108
27DAP/reference0.95440.146
39DAP/reference0.836510.011
41DAP/reference0.825850.021
42DAP/reference0.842060.012
43DAP/reference0.885570.027
47DAP/reference0.893730.222
52DAP/reference0.853390.083
57DAP/reference0.832660.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140820.141
17DAP/reference1.181050.039
27DAP/reference1.077160.535
39DAP/reference1.074410.571
41DAP/reference1.028641
42DAP/reference1.003311
43DAP/reference1.241390.078
47DAP/reference1.075950.218
52DAP/reference1.184660.017
57DAP/reference1.247910.089

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990770.653
17DAP/reference1.058210.784
27DAP/reference0.847470.055
39DAP/reference0.965280.504
41DAP/reference0.913040.185
42DAP/reference1.08650.529
43DAP/reference0.974320.545
47DAP/reference1.174790.12
52DAP/reference0.92360.368
57DAP/reference1.067060.933

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.034691
26DAP/20DAP0.94680.512
34DAP/26DAP0.977510.972
51DAP/34DAP1.037730.978
52DAP/51DAP1.027280.915
53DAP/52DAP1.011351
55DAP/53DAP1.289590.236
57DAP/55DAP0.988860.891
62DAP/57DAP1.263490.034
68DAP/62DAP0.855650.378
68DAP/14DAP1.019240.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.975030.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.95252
Mature Green Tomato/Ripe Tomato1.106640.881
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.601840.293
Mature Eggplant/Ripe Tomato1.21031

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.103880.877
1-1-2/M820.946931
12-2/M821.053061
12-4/M820.911731
1-3/M820.93073
2-1-1/M820.82835
2-1/M82N/AN/A
2-6/M821.004751
3-2/M820.83633
4-1-1/M820.93691
4-1/M820.855991
4-3-2/M820.776520.698
4-3/M820.810040.509
5-3/M821.01351
6-2/M82N/AN/A
6-3/M821.1695
7-1/M821.05253
7-2/M821.023011
9-3-2/M820.836710.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.08510.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.16341
WT/WTpooled0.8563

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.963451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.050150.921
DC3000/delta hrp 6h1.049541
DC3000/delta hrp 12h0.97911
DC3000/delta hrp 24h1.129160.243

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.699530.047
DC3000 delta B/DC3000 delta AB0.80840.047

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.122421
Exp 36h0.943540.879
Exp 60h1.025231

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010281
Var 0h1.223790.421
Var 12h I row2-row10.953850.856
Var 12h NI row2-row11.005321
Var 36h I row2-row11.020951
Var 36h NI row2-row11.174921
Var 60h I row2-row11.15705
Var 60h NI row2-row11.063920.4
Time course 0hI-0hNI1.001141
Time course 12hI-12hNI0.917430.173
Time course 36hI-36hNI0.842980.023
Time course 60hI-60hNI0.502490.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.896960.315
transgenic ySAMdc/azygous control (breaker)1.071331
transgenic ySAMdc/azygous control (red)0.958621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.954450.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.759671
Manapal/WT (break)1.054711
Manapal/WT (red)1.270610.142