Expression of 1-1-1.2.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.071690.893
27DAP/17DAP0.863220.677
39DAP/27DAP1.229160.626
41DAP/39DAP0.984680.905
42DAP/41DAP1.484730.33
43DAP/42DAP1.303910.662
47DAP/43DAP1.045050.913
52DAP/47DAP0.806740.521
57DAP/52DAP1.231540.561

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.097350.928
17DAP/reference1.658850.028
27DAP/reference1.245570.098
39DAP/reference1.242890.294
41DAP/reference1.514740.038
42DAP/reference1.5620.006
43DAP/reference1.072170.382
47DAP/reference1.044910.862
52DAP/reference1.102640.453
57DAP/reference0.924510.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.198610.066
27DAP/17DAP0.944080.878
39DAP/27DAP1.020071
41DAP/39DAP0.793870.347
42DAP/41DAP1.200630.763
43DAP/42DAP1.486630.017
47DAP/43DAP0.988160.93
52DAP/47DAP0.961780.898
57DAP/52DAP1.098580.594
57DAP/7DAP1.075521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.773760.157
17DAP/reference0.658510.014
27DAP/reference0.691380.011
39DAP/reference0.87820.17
41DAP/reference0.786160.086
42DAP/reference1.297080.037
43DAP/reference1.171770.2
47DAP/reference1.303170.158
52DAP/reference0.987290.621
57DAP/reference1.33650.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07940.885
17DAP/reference1.386240.229
27DAP/reference1.089970.629
39DAP/reference1.161690.725
41DAP/reference1.164710.188
42DAP/reference1.11270.466
43DAP/reference1.392210.034
47DAP/reference1.076780.353
52DAP/reference1.128670.702
57DAP/reference1.224180.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.810550.158
17DAP/reference0.977940.624
27DAP/reference0.851980.206
39DAP/reference0.913580.163
41DAP/reference1.075780.637
42DAP/reference1.19090.158
43DAP/reference1.30160.032
47DAP/reference1.312910.339
52DAP/reference1.180510.639
57DAP/reference0.686830.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.483040.735
26DAP/20DAP0.902321
34DAP/26DAP1.083120.819
51DAP/34DAP0.58240.088
52DAP/51DAP0.902561
53DAP/52DAP0.686420.371
55DAP/53DAP0.847140.445
57DAP/55DAP1.016440.927
62DAP/57DAP0.949560.994
68DAP/62DAP1.063760.914
68DAP/14DAP0.728290.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.144630.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.477290.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.13167
Mature Eggplant/Ripe Tomato0.119760.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.552090.455
1-1-2/M821.214151
12-2/M820.16259
12-4/M820.726020.619
1-3/M82N/AN/A
2-1-1/M820.69424
2-1/M820.30719
2-6/M820.86251
3-2/M821.17275
4-1-1/M821.137591
4-1/M820.54797
4-3-2/M821.51097
4-3/M821.13771
5-3/M821.126881
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.97536
7-2/M821.230790.324
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.682580.277
IL2-6/WTpooled0.590550.473
IL7-5/WTpooled0.73485
IL7-3/WTpooled1.395581
IL12-4/WTpooled0.870190.71
IL1-4/WTpooled1.404051
WT/WTpooled0.924651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.992711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.922651
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.158051
DC3000/delta hrp 24h0.46380.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.732280.027
DC3000 delta B/DC3000 delta AB0.669660.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029041
Var 0h0.989211
Var 12h I row2-row10.87920.514
Var 12h NI row2-row10.977840.906
Var 36h I row2-row10.704481
Var 36h NI row2-row11.16361
Var 60h I row2-row10.981
Var 60h NI row2-row11.053451
Time course 0hI-0hNI0.980390.94
Time course 12hI-12hNI1.035190.779
Time course 36hI-36hNI0.91270.136
Time course 60hI-60hNI0.245640.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.924951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.897020.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.242571

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.457220.222