Expression of 1-1-1.2.19.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07169 | 0.893 |
27DAP/17DAP | 0.86322 | 0.677 |
39DAP/27DAP | 1.22916 | 0.626 |
41DAP/39DAP | 0.98468 | 0.905 |
42DAP/41DAP | 1.48473 | 0.33 |
43DAP/42DAP | 1.30391 | 0.662 |
47DAP/43DAP | 1.04505 | 0.913 |
52DAP/47DAP | 0.80674 | 0.521 |
57DAP/52DAP | 1.23154 | 0.561 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09735 | 0.928 |
17DAP/reference | 1.65885 | 0.028 |
27DAP/reference | 1.24557 | 0.098 |
39DAP/reference | 1.24289 | 0.294 |
41DAP/reference | 1.51474 | 0.038 |
42DAP/reference | 1.562 | 0.006 |
43DAP/reference | 1.07217 | 0.382 |
47DAP/reference | 1.04491 | 0.862 |
52DAP/reference | 1.10264 | 0.453 |
57DAP/reference | 0.92451 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19861 | 0.066 |
27DAP/17DAP | 0.94408 | 0.878 |
39DAP/27DAP | 1.02007 | 1 |
41DAP/39DAP | 0.79387 | 0.347 |
42DAP/41DAP | 1.20063 | 0.763 |
43DAP/42DAP | 1.48663 | 0.017 |
47DAP/43DAP | 0.98816 | 0.93 |
52DAP/47DAP | 0.96178 | 0.898 |
57DAP/52DAP | 1.09858 | 0.594 |
57DAP/7DAP | 1.07552 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77376 | 0.157 |
17DAP/reference | 0.65851 | 0.014 |
27DAP/reference | 0.69138 | 0.011 |
39DAP/reference | 0.8782 | 0.17 |
41DAP/reference | 0.78616 | 0.086 |
42DAP/reference | 1.29708 | 0.037 |
43DAP/reference | 1.17177 | 0.2 |
47DAP/reference | 1.30317 | 0.158 |
52DAP/reference | 0.98729 | 0.621 |
57DAP/reference | 1.3365 | 0.019 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0794 | 0.885 |
17DAP/reference | 1.38624 | 0.229 |
27DAP/reference | 1.08997 | 0.629 |
39DAP/reference | 1.16169 | 0.725 |
41DAP/reference | 1.16471 | 0.188 |
42DAP/reference | 1.1127 | 0.466 |
43DAP/reference | 1.39221 | 0.034 |
47DAP/reference | 1.07678 | 0.353 |
52DAP/reference | 1.12867 | 0.702 |
57DAP/reference | 1.22418 | 0.786 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81055 | 0.158 |
17DAP/reference | 0.97794 | 0.624 |
27DAP/reference | 0.85198 | 0.206 |
39DAP/reference | 0.91358 | 0.163 |
41DAP/reference | 1.07578 | 0.637 |
42DAP/reference | 1.1909 | 0.158 |
43DAP/reference | 1.3016 | 0.032 |
47DAP/reference | 1.31291 | 0.339 |
52DAP/reference | 1.18051 | 0.639 |
57DAP/reference | 0.68683 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.48304 | 0.735 |
26DAP/20DAP | 0.90232 | 1 |
34DAP/26DAP | 1.08312 | 0.819 |
51DAP/34DAP | 0.5824 | 0.088 |
52DAP/51DAP | 0.90256 | 1 |
53DAP/52DAP | 0.68642 | 0.371 |
55DAP/53DAP | 0.84714 | 0.445 |
57DAP/55DAP | 1.01644 | 0.927 |
62DAP/57DAP | 0.94956 | 0.994 |
68DAP/62DAP | 1.06376 | 0.914 |
68DAP/14DAP | 0.72829 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14463 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.47729 | 0.021 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.13167 | |
Mature Eggplant/Ripe Tomato | 0.11976 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.55209 | 0.455 |
1-1-2/M82 | 1.21415 | 1 |
12-2/M82 | 0.16259 | |
12-4/M82 | 0.72602 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.69424 | |
2-1/M82 | 0.30719 | |
2-6/M82 | 0.86251 | |
3-2/M82 | 1.17275 | |
4-1-1/M82 | 1.13759 | 1 |
4-1/M82 | 0.54797 | |
4-3-2/M82 | 1.51097 | |
4-3/M82 | 1.1377 | 1 |
5-3/M82 | 1.12688 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.97536 | |
7-2/M82 | 1.23079 | 0.324 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.68258 | 0.277 |
IL2-6/WTpooled | 0.59055 | 0.473 |
IL7-5/WTpooled | 0.73485 | |
IL7-3/WTpooled | 1.39558 | 1 |
IL12-4/WTpooled | 0.87019 | 0.71 |
IL1-4/WTpooled | 1.40405 | 1 |
WT/WTpooled | 0.92465 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99271 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92265 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.15805 | 1 |
DC3000/delta hrp 24h | 0.4638 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.73228 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.66966 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02904 | 1 |
Var 0h | 0.98921 | 1 |
Var 12h I row2-row1 | 0.8792 | 0.514 |
Var 12h NI row2-row1 | 0.97784 | 0.906 |
Var 36h I row2-row1 | 0.70448 | 1 |
Var 36h NI row2-row1 | 1.1636 | 1 |
Var 60h I row2-row1 | 0.98 | 1 |
Var 60h NI row2-row1 | 1.05345 | 1 |
Time course 0hI-0hNI | 0.98039 | 0.94 |
Time course 12hI-12hNI | 1.03519 | 0.779 |
Time course 36hI-36hNI | 0.9127 | 0.136 |
Time course 60hI-60hNI | 0.24564 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.92495 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89702 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.24257 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.45722 | 0.222 |
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