Expression of 1-1-1.2.2.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97027 | 0.788 |
27DAP/17DAP | 0.93115 | 0.863 |
39DAP/27DAP | 1.80644 | 0.084 |
41DAP/39DAP | 0.70752 | 0.139 |
42DAP/41DAP | 1.08805 | 0.974 |
43DAP/42DAP | 0.81337 | 0.698 |
47DAP/43DAP | 0.94177 | 0.788 |
52DAP/47DAP | 1.04404 | 0.96 |
57DAP/52DAP | 1.66849 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33125 | 0.012 |
17DAP/reference | 1.03263 | 0.74 |
27DAP/reference | 1.00529 | 0.904 |
39DAP/reference | 0.99308 | 0.901 |
41DAP/reference | 0.95251 | 0.434 |
42DAP/reference | 1.17485 | 0.041 |
43DAP/reference | 1.08393 | 0.163 |
47DAP/reference | 1.07221 | 0.215 |
52DAP/reference | 1.03438 | 0.951 |
57DAP/reference | 1.13545 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05242 | 0.947 |
27DAP/17DAP | 0.9014 | 0.418 |
39DAP/27DAP | 0.96973 | 0.754 |
41DAP/39DAP | 1.16875 | 0.294 |
42DAP/41DAP | 0.9212 | 0.466 |
43DAP/42DAP | 0.90409 | 0.224 |
47DAP/43DAP | 1.1001 | 0.52 |
52DAP/47DAP | 0.92519 | 0.729 |
57DAP/52DAP | 1.41316 | 0.368 |
57DAP/7DAP | 2.16825 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56852 | 0.024 |
17DAP/reference | 1.49147 | 0.007 |
27DAP/reference | 1.29406 | 0.088 |
39DAP/reference | 1.40423 | 0.007 |
41DAP/reference | 1.24671 | 0.015 |
42DAP/reference | 1.54597 | 0.014 |
43DAP/reference | 1.30112 | 0.007 |
47DAP/reference | 1.23242 | 0.021 |
52DAP/reference | 1.64409 | 0.007 |
57DAP/reference | 1.52767 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26605 | 0.043 |
17DAP/reference | 1.4635 | 0.014 |
27DAP/reference | 1.39135 | 0.029 |
39DAP/reference | 1.33949 | 0.012 |
41DAP/reference | 1.18429 | 0.07 |
42DAP/reference | 1.37679 | 0.009 |
43DAP/reference | 1.18392 | 0.13 |
47DAP/reference | 1.33192 | 0.02 |
52DAP/reference | 0.92804 | 0.22 |
57DAP/reference | 0.95933 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48346 | 0.039 |
17DAP/reference | 3.75482 | 0.384 |
27DAP/reference | 1.13092 | 0.179 |
39DAP/reference | 1.70405 | 0.005 |
41DAP/reference | 1.25875 | 0.02 |
42DAP/reference | 1.31377 | 0.068 |
43DAP/reference | 1.38042 | 0.037 |
47DAP/reference | 1.04449 | 0.655 |
52DAP/reference | 1.17366 | 0.194 |
57DAP/reference | 1.18819 | 0.394 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0965 | 0.966 |
26DAP/20DAP | 1.49598 | 0.197 |
34DAP/26DAP | 0.84408 | 0.539 |
51DAP/34DAP | 0.55725 | 0.063 |
52DAP/51DAP | 0.86685 | 0.151 |
53DAP/52DAP | 0.82109 | 0.374 |
55DAP/53DAP | 1.75516 | 0.703 |
57DAP/55DAP | 1.25303 | 0.841 |
62DAP/57DAP | 1.24249 | 0.723 |
68DAP/62DAP | 1.06111 | 1 |
68DAP/14DAP | 1.10021 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.96299 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.28692 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.57766 | 0.032 |
Immature Eggplant/Mature Eggplant | 1.15644 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.00445 | 1 |
Mature Eggplant/Ripe Tomato | 1.93586 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05537 | 1 |
1-1-2/M82 | 1.2283 | 1 |
12-2/M82 | 0.68862 | |
12-4/M82 | 0.66309 | |
1-3/M82 | 1.47106 | |
2-1-1/M82 | 0.83971 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.20062 | 0.339 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.18172 | |
4-1/M82 | 1.08133 | |
4-3-2/M82 | 1.63806 | 0.508 |
4-3/M82 | 1.3207 | |
5-3/M82 | 1.27582 | 0.572 |
6-2/M82 | 1.18542 | |
6-3/M82 | 0.75575 | |
7-1/M82 | 0.85873 | |
7-2/M82 | 0.95485 | 0.881 |
9-3-2/M82 | 1.53909 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80991 | 0.321 |
IL2-6/WTpooled | 0.81929 | 0.473 |
IL7-5/WTpooled | 1.24387 | 1 |
IL7-3/WTpooled | 0.99799 | 1 |
IL12-4/WTpooled | 0.99346 | 1 |
IL1-4/WTpooled | 1.01212 | 1 |
WT/WTpooled | 1.00966 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03643 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13797 | 0.715 |
DC3000/delta hrp 6h | 0.9316 | 0.95 |
DC3000/delta hrp 12h | 1.07295 | 1 |
DC3000/delta hrp 24h | 1.09897 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10683 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.41871 | 0.137 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9454 | 1 |
Exp 36h | 1.21829 | 1 |
Exp 60h | 1.08126 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00761 | 1 |
Var 0h | 1.08117 | 1 |
Var 12h I row2-row1 | 0.96091 | 0.948 |
Var 12h NI row2-row1 | 1.2404 | 1 |
Var 36h I row2-row1 | 1.31846 | 0.368 |
Var 36h NI row2-row1 | 1.09729 | 1 |
Var 60h I row2-row1 | 0.958 | 0.832 |
Var 60h NI row2-row1 | 0.77631 | 0.292 |
Time course 0hI-0hNI | 0.90918 | 0.522 |
Time course 12hI-12hNI | 1.01566 | 0.836 |
Time course 36hI-36hNI | 1.46488 | 0.05 |
Time course 60hI-60hNI | 1.41823 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92858 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 1.47749 | 0.178 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03383 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8546 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9267 | 1 |
Manapal/WT (break) | 0.96873 | 0.333 |
Manapal/WT (red) | 1.11058 | 1 |
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