Expression of 1-1-1.2.2.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.970270.788
27DAP/17DAP0.931150.863
39DAP/27DAP1.806440.084
41DAP/39DAP0.707520.139
42DAP/41DAP1.088050.974
43DAP/42DAP0.813370.698
47DAP/43DAP0.941770.788
52DAP/47DAP1.044040.96
57DAP/52DAP1.668490.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.331250.012
17DAP/reference1.032630.74
27DAP/reference1.005290.904
39DAP/reference0.993080.901
41DAP/reference0.952510.434
42DAP/reference1.174850.041
43DAP/reference1.083930.163
47DAP/reference1.072210.215
52DAP/reference1.034380.951
57DAP/reference1.135450.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.052420.947
27DAP/17DAP0.90140.418
39DAP/27DAP0.969730.754
41DAP/39DAP1.168750.294
42DAP/41DAP0.92120.466
43DAP/42DAP0.904090.224
47DAP/43DAP1.10010.52
52DAP/47DAP0.925190.729
57DAP/52DAP1.413160.368
57DAP/7DAP2.16825

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.568520.024
17DAP/reference1.491470.007
27DAP/reference1.294060.088
39DAP/reference1.404230.007
41DAP/reference1.246710.015
42DAP/reference1.545970.014
43DAP/reference1.301120.007
47DAP/reference1.232420.021
52DAP/reference1.644090.007
57DAP/reference1.527670.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.266050.043
17DAP/reference1.46350.014
27DAP/reference1.391350.029
39DAP/reference1.339490.012
41DAP/reference1.184290.07
42DAP/reference1.376790.009
43DAP/reference1.183920.13
47DAP/reference1.331920.02
52DAP/reference0.928040.22
57DAP/reference0.959330.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.483460.039
17DAP/reference3.754820.384
27DAP/reference1.130920.179
39DAP/reference1.704050.005
41DAP/reference1.258750.02
42DAP/reference1.313770.068
43DAP/reference1.380420.037
47DAP/reference1.044490.655
52DAP/reference1.173660.194
57DAP/reference1.188190.394

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.09650.966
26DAP/20DAP1.495980.197
34DAP/26DAP0.844080.539
51DAP/34DAP0.557250.063
52DAP/51DAP0.866850.151
53DAP/52DAP0.821090.374
55DAP/53DAP1.755160.703
57DAP/55DAP1.253030.841
62DAP/57DAP1.242490.723
68DAP/62DAP1.061111
68DAP/14DAP1.100210.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.962990.025

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.286920.075
Mature Green Tomato/Ripe Tomato1.577660.032
Immature Eggplant/Mature Eggplant1.156440.062
Ripe Pepper/Ripe Tomato1.004451
Mature Eggplant/Ripe Tomato1.935860.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.055371
1-1-2/M821.22831
12-2/M820.68862
12-4/M820.66309
1-3/M821.47106
2-1-1/M820.83971
2-1/M82N/AN/A
2-6/M821.200620.339
3-2/M82N/AN/A
4-1-1/M821.18172
4-1/M821.08133
4-3-2/M821.638060.508
4-3/M821.3207
5-3/M821.275820.572
6-2/M821.18542
6-3/M820.75575
7-1/M820.85873
7-2/M820.954850.881
9-3-2/M821.539091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.809910.321
IL2-6/WTpooled0.819290.473
IL7-5/WTpooled1.243871
IL7-3/WTpooled0.997991
IL12-4/WTpooled0.993461
IL1-4/WTpooled1.012121
WT/WTpooled1.009661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.036431

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.137970.715
DC3000/delta hrp 6h0.93160.95
DC3000/delta hrp 12h1.072951
DC3000/delta hrp 24h1.098970.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.106830.29
DC3000 delta B/DC3000 delta AB1.418710.137

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.94541
Exp 36h1.218291
Exp 60h1.081261

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007611
Var 0h1.081171
Var 12h I row2-row10.960910.948
Var 12h NI row2-row11.24041
Var 36h I row2-row11.318460.368
Var 36h NI row2-row11.097291
Var 60h I row2-row10.9580.832
Var 60h NI row2-row10.776310.292
Time course 0hI-0hNI0.909180.522
Time course 12hI-12hNI1.015660.836
Time course 36hI-36hNI1.464880.05
Time course 60hI-60hNI1.418230.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.928580.377
transgenic ySAMdc/azygous control (breaker)1.477490.178
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.033830.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.85460.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.92671
Manapal/WT (break)0.968730.333
Manapal/WT (red)1.110581