Expression of 1-1-1.2.2.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.99050.722
27DAP/17DAP3.177260.24
39DAP/27DAP0.871980.414
41DAP/39DAP0.707310.238
42DAP/41DAP1.801050.681
43DAP/42DAP0.996630.912
47DAP/43DAP0.607210.113
52DAP/47DAP1.12860.712
57DAP/52DAP1.530710.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.657460.054
17DAP/reference0.83080.474
27DAP/reference0.980350.668
39DAP/reference0.99433
41DAP/referenceN/AN/A
42DAP/reference1.027450.565
43DAP/reference1.024150.838
47DAP/reference1.148220.84
52DAP/reference0.845080.162
57DAP/reference1.773480.621

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.820960.428
27DAP/17DAP1.004520.943
39DAP/27DAP1.036320.845
41DAP/39DAP0.995640.997
42DAP/41DAP1.500110.47
43DAP/42DAP1.001010.928
47DAP/43DAP1.206650.812
52DAP/47DAP0.724360.466
57DAP/52DAP1.936890.262
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89030.27
17DAP/reference1.483650.007
27DAP/reference1.237130.551
39DAP/reference1.183740.12
41DAP/reference1.178420.086
42DAP/reference0.994520.641
43DAP/reference0.764730.079
47DAP/reference0.96564
52DAP/reference0.961560.477
57DAP/reference1.032790.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921960.548
17DAP/reference0.68611
27DAP/reference0.912
39DAP/reference2.35105
41DAP/reference0.732240.322
42DAP/reference0.934940.594
43DAP/reference1.043241
47DAP/reference1.339480.24
52DAP/referenceN/AN/A
57DAP/reference1.47161

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.874640.362
17DAP/reference1.517960.337
27DAP/reference1.3442
39DAP/reference6.23560.365
41DAP/reference1.208910.502
42DAP/reference1.584570.55
43DAP/reference1.269990.087
47DAP/reference1.46855
52DAP/reference0.772980.368
57DAP/reference0.97354

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.571670.966
26DAP/20DAP0.48616
34DAP/26DAP1.313141
51DAP/34DAP0.770140.093
52DAP/51DAP0.84829
53DAP/52DAP1.578110.028
55DAP/53DAP0.319
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP1.59530.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.14827

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.998611
IL2-6/WTpooled1.366990.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.018621
IL12-4/WTpooled1.219010.525
IL1-4/WTpooled1.062131
WT/WTpooled1.005681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.64629

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.122940.381
Manapal/WT (red)N/AN/A