Expression of 1-1-1.2.20.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.639640.103
27DAP/17DAP1.0540.93
39DAP/27DAP0.932430.652
41DAP/39DAP1.015970.841
42DAP/41DAP0.954141
43DAP/42DAP0.821010.759
47DAP/43DAP1.227650.4
52DAP/47DAP0.969060.742
57DAP/52DAP1.157420.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.876730.167
17DAP/reference1.036590.546
27DAP/reference1.082710.684
39DAP/reference1.016020.786
41DAP/reference1.038490.714
42DAP/reference0.89930.034
43DAP/reference0.971680.653
47DAP/reference0.980650.445
52DAP/reference0.95210.393
57DAP/reference0.958590.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.806560.037
27DAP/17DAP0.749880.537
39DAP/27DAP1.006051
41DAP/39DAP1.005660.921
42DAP/41DAP0.853460.407
43DAP/42DAP1.11530.554
47DAP/43DAP0.956810.902
52DAP/47DAP1.283520.73
57DAP/52DAP0.977450.789
57DAP/7DAP0.3868

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999160.758
17DAP/reference1.210170.084
27DAP/reference0.993240.656
39DAP/reference0.949040.095
41DAP/reference1.086060.701
42DAP/reference0.979820.531
43DAP/reference0.94640.056
47DAP/reference1.012731
52DAP/reference0.90810.213
57DAP/reference1.053710.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.974330.706
17DAP/reference0.958870.434
27DAP/reference0.879920.167
39DAP/reference0.845220.129
41DAP/reference0.891280.091
42DAP/reference1.044821
43DAP/reference1.042920.885
47DAP/reference0.95250.319
52DAP/reference0.804370.012
57DAP/reference0.881340.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.966860.489
17DAP/reference0.902450.305
27DAP/reference0.882970.102
39DAP/reference0.799820.011
41DAP/reference0.886760.077
42DAP/reference0.849550.049
43DAP/reference0.812470.066
47DAP/reference0.998550.731
52DAP/reference0.943680.573
57DAP/reference0.845540.111

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.017471
26DAP/20DAP0.873771
34DAP/26DAP1.490620.304
51DAP/34DAP0.721080.24
52DAP/51DAP1.322460.163
53DAP/52DAP0.833680.684
55DAP/53DAP1.070120.989
57DAP/55DAP1.290420.854
62DAP/57DAP0.949220.994
68DAP/62DAP1.382980.185
68DAP/14DAP1.9380.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.328420.627

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.57113
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.90608
Mature Eggplant/Ripe Tomato1.05804

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.97776
1-1-2/M821.10259
12-2/M82N/AN/A
12-4/M821.22586
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.969331
6-2/M82N/AN/A
6-3/M820.988331
7-1/M82N/AN/A
7-2/M821.20155
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.00581
IL2-6/WTpooled0.92191
IL7-5/WTpooled1.044511
IL7-3/WTpooled0.99081
IL12-4/WTpooled0.915990.581
IL1-4/WTpooled0.988091
WT/WTpooled0.997531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.024711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.22650.875
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.973550.851

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.111791
DC3000 delta B/DC3000 delta AB1.31372

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.062161

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.1101
Var 0hN/AN/A
Var 12h I row2-row10.818660.705
Var 12h NI row2-row10.984991
Var 36h I row2-row11.381970.309
Var 36h NI row2-row11.229931
Var 60h I row2-row11.047831
Var 60h NI row2-row10.666610.932
Time course 0hI-0hNI0.888630.386
Time course 12hI-12hNI1.092040.567
Time course 36hI-36hNI1.149960.453
Time course 60hI-60hNI2.691220.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.912640.567
transgenic ySAMdc/azygous control (breaker)1.356990.162
transgenic ySAMdc/azygous control (red)1.122450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.021440.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.06271

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.082880.09
Manapal/WT (break)0.678720.299
Manapal/WT (red)1.282720.413