Expression of 1-1-1.2.20.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.63964 | 0.103 |
27DAP/17DAP | 1.054 | 0.93 |
39DAP/27DAP | 0.93243 | 0.652 |
41DAP/39DAP | 1.01597 | 0.841 |
42DAP/41DAP | 0.95414 | 1 |
43DAP/42DAP | 0.82101 | 0.759 |
47DAP/43DAP | 1.22765 | 0.4 |
52DAP/47DAP | 0.96906 | 0.742 |
57DAP/52DAP | 1.15742 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87673 | 0.167 |
17DAP/reference | 1.03659 | 0.546 |
27DAP/reference | 1.08271 | 0.684 |
39DAP/reference | 1.01602 | 0.786 |
41DAP/reference | 1.03849 | 0.714 |
42DAP/reference | 0.8993 | 0.034 |
43DAP/reference | 0.97168 | 0.653 |
47DAP/reference | 0.98065 | 0.445 |
52DAP/reference | 0.9521 | 0.393 |
57DAP/reference | 0.95859 | 0.435 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80656 | 0.037 |
27DAP/17DAP | 0.74988 | 0.537 |
39DAP/27DAP | 1.00605 | 1 |
41DAP/39DAP | 1.00566 | 0.921 |
42DAP/41DAP | 0.85346 | 0.407 |
43DAP/42DAP | 1.1153 | 0.554 |
47DAP/43DAP | 0.95681 | 0.902 |
52DAP/47DAP | 1.28352 | 0.73 |
57DAP/52DAP | 0.97745 | 0.789 |
57DAP/7DAP | 0.3868 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99916 | 0.758 |
17DAP/reference | 1.21017 | 0.084 |
27DAP/reference | 0.99324 | 0.656 |
39DAP/reference | 0.94904 | 0.095 |
41DAP/reference | 1.08606 | 0.701 |
42DAP/reference | 0.97982 | 0.531 |
43DAP/reference | 0.9464 | 0.056 |
47DAP/reference | 1.01273 | 1 |
52DAP/reference | 0.9081 | 0.213 |
57DAP/reference | 1.05371 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97433 | 0.706 |
17DAP/reference | 0.95887 | 0.434 |
27DAP/reference | 0.87992 | 0.167 |
39DAP/reference | 0.84522 | 0.129 |
41DAP/reference | 0.89128 | 0.091 |
42DAP/reference | 1.04482 | 1 |
43DAP/reference | 1.04292 | 0.885 |
47DAP/reference | 0.9525 | 0.319 |
52DAP/reference | 0.80437 | 0.012 |
57DAP/reference | 0.88134 | 0.079 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96686 | 0.489 |
17DAP/reference | 0.90245 | 0.305 |
27DAP/reference | 0.88297 | 0.102 |
39DAP/reference | 0.79982 | 0.011 |
41DAP/reference | 0.88676 | 0.077 |
42DAP/reference | 0.84955 | 0.049 |
43DAP/reference | 0.81247 | 0.066 |
47DAP/reference | 0.99855 | 0.731 |
52DAP/reference | 0.94368 | 0.573 |
57DAP/reference | 0.84554 | 0.111 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01747 | 1 |
26DAP/20DAP | 0.87377 | 1 |
34DAP/26DAP | 1.49062 | 0.304 |
51DAP/34DAP | 0.72108 | 0.24 |
52DAP/51DAP | 1.32246 | 0.163 |
53DAP/52DAP | 0.83368 | 0.684 |
55DAP/53DAP | 1.07012 | 0.989 |
57DAP/55DAP | 1.29042 | 0.854 |
62DAP/57DAP | 0.94922 | 0.994 |
68DAP/62DAP | 1.38298 | 0.185 |
68DAP/14DAP | 1.938 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.32842 | 0.627 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.57113 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.90608 | |
Mature Eggplant/Ripe Tomato | 1.05804 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97776 | |
1-1-2/M82 | 1.10259 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.22586 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.96933 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.98833 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.20155 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00581 | |
IL2-6/WTpooled | 0.9219 | 1 |
IL7-5/WTpooled | 1.04451 | 1 |
IL7-3/WTpooled | 0.9908 | 1 |
IL12-4/WTpooled | 0.91599 | 0.581 |
IL1-4/WTpooled | 0.98809 | 1 |
WT/WTpooled | 0.99753 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02471 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.2265 | 0.875 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.97355 | 0.851 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11179 | 1 |
DC3000 delta B/DC3000 delta AB | 1.31372 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.06216 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.1101 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.81866 | 0.705 |
Var 12h NI row2-row1 | 0.98499 | 1 |
Var 36h I row2-row1 | 1.38197 | 0.309 |
Var 36h NI row2-row1 | 1.22993 | 1 |
Var 60h I row2-row1 | 1.04783 | 1 |
Var 60h NI row2-row1 | 0.66661 | 0.932 |
Time course 0hI-0hNI | 0.88863 | 0.386 |
Time course 12hI-12hNI | 1.09204 | 0.567 |
Time course 36hI-36hNI | 1.14996 | 0.453 |
Time course 60hI-60hNI | 2.69122 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91264 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 1.35699 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.12245 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02144 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0627 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08288 | 0.09 |
Manapal/WT (break) | 0.67872 | 0.299 |
Manapal/WT (red) | 1.28272 | 0.413 |
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