Expression of 1-1-1.2.4.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.104230.709
27DAP/17DAP1.115591
39DAP/27DAP0.902590.594
41DAP/39DAP1.158440.293
42DAP/41DAP1.183970.876
43DAP/42DAP1.171860.864
47DAP/43DAP1.102460.746
52DAP/47DAP0.765150.486
57DAP/52DAP0.815930.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.935860.284
17DAP/reference0.889850.169
27DAP/reference0.899830.295
39DAP/reference0.836360.023
41DAP/reference0.826310.011
42DAP/reference0.899070.028
43DAP/reference0.973540.691
47DAP/reference1.064670.463
52DAP/reference1.15090.195
57DAP/reference1.211260.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.079931
27DAP/17DAP1.076230.957
39DAP/27DAP0.906860.52
41DAP/39DAP1.002261
42DAP/41DAP0.835690.253
43DAP/42DAP0.929890.641
47DAP/43DAP1.232060.485
52DAP/47DAP0.970140.899
57DAP/52DAP1.14790.457
57DAP/7DAP1.63523

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.289570.101
17DAP/reference1.22840.134
27DAP/reference1.626030.007
39DAP/reference1.483730.01
41DAP/reference1.445090.011
42DAP/reference1.424210.01
43DAP/reference1.345690.024
47DAP/reference1.415560.224
52DAP/reference2.274810.013
57DAP/reference1.571210.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.758450.1
17DAP/reference0.791590.041
27DAP/reference0.996360.735
39DAP/reference1.062190.891
41DAP/reference0.992740.631
42DAP/reference0.845910.108
43DAP/reference1.181950.575
47DAP/reference0.89570.154
52DAP/reference1.174520.24
57DAP/reference0.977090.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135810.106
17DAP/reference1.104240.522
27DAP/reference1.436530.312
39DAP/reference1.093230.451
41DAP/reference1.158320.276
42DAP/reference1.290480.114
43DAP/reference1.254120.19
47DAP/reference0.910180.063
52DAP/reference1.376720.119
57DAP/reference1.178490.121

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.074360.966
26DAP/20DAP1.254750.562
34DAP/26DAP1.057020.961
51DAP/34DAP1.413110.377
52DAP/51DAP1.180910.367
53DAP/52DAP0.858790.527
55DAP/53DAP1.02671
57DAP/55DAP1.385130.584
62DAP/57DAP1.026720.935
68DAP/62DAP0.996830.885
68DAP/14DAP1.266030.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.774830.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.728110.274
Mature Green Tomato/Ripe Tomato0.603710.377
Immature Eggplant/Mature Eggplant1.160030.278
Ripe Pepper/Ripe Tomato2.803590.258
Mature Eggplant/Ripe Tomato1.61343

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997031
1-1-2/M820.83480.958
12-2/M821.02733
12-4/M821.08346
1-3/M820.69749
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.084070.594
3-2/M82N/AN/A
4-1-1/M821.099210.938
4-1/M820.94901
4-3-2/M821.05281
4-3/M820.747450.397
5-3/M821.041991
6-2/M821.050391
6-3/M821.136911
7-1/M82N/AN/A
7-2/M821.000161
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.727130.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99631
DC3000/delta hrp 6h0.766940.95
DC3000/delta hrp 12h0.932771
DC3000/delta hrp 24h0.88180.269

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.54874
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.945460.328
Exp 36h0.952760.879
Exp 60h1.038930.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.060680.256
transgenic ySAMdc/azygous control (breaker)1.107311
transgenic ySAMdc/azygous control (red)1.050951

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99430.694

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.925430.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.874471
Manapal/WT (break)1.338190.381
Manapal/WT (red)1.061891