Expression of 1-1-1.2.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10423 | 0.709 |
27DAP/17DAP | 1.11559 | 1 |
39DAP/27DAP | 0.90259 | 0.594 |
41DAP/39DAP | 1.15844 | 0.293 |
42DAP/41DAP | 1.18397 | 0.876 |
43DAP/42DAP | 1.17186 | 0.864 |
47DAP/43DAP | 1.10246 | 0.746 |
52DAP/47DAP | 0.76515 | 0.486 |
57DAP/52DAP | 0.81593 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93586 | 0.284 |
17DAP/reference | 0.88985 | 0.169 |
27DAP/reference | 0.89983 | 0.295 |
39DAP/reference | 0.83636 | 0.023 |
41DAP/reference | 0.82631 | 0.011 |
42DAP/reference | 0.89907 | 0.028 |
43DAP/reference | 0.97354 | 0.691 |
47DAP/reference | 1.06467 | 0.463 |
52DAP/reference | 1.1509 | 0.195 |
57DAP/reference | 1.21126 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07993 | 1 |
27DAP/17DAP | 1.07623 | 0.957 |
39DAP/27DAP | 0.90686 | 0.52 |
41DAP/39DAP | 1.00226 | 1 |
42DAP/41DAP | 0.83569 | 0.253 |
43DAP/42DAP | 0.92989 | 0.641 |
47DAP/43DAP | 1.23206 | 0.485 |
52DAP/47DAP | 0.97014 | 0.899 |
57DAP/52DAP | 1.1479 | 0.457 |
57DAP/7DAP | 1.63523 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28957 | 0.101 |
17DAP/reference | 1.2284 | 0.134 |
27DAP/reference | 1.62603 | 0.007 |
39DAP/reference | 1.48373 | 0.01 |
41DAP/reference | 1.44509 | 0.011 |
42DAP/reference | 1.42421 | 0.01 |
43DAP/reference | 1.34569 | 0.024 |
47DAP/reference | 1.41556 | 0.224 |
52DAP/reference | 2.27481 | 0.013 |
57DAP/reference | 1.57121 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75845 | 0.1 |
17DAP/reference | 0.79159 | 0.041 |
27DAP/reference | 0.99636 | 0.735 |
39DAP/reference | 1.06219 | 0.891 |
41DAP/reference | 0.99274 | 0.631 |
42DAP/reference | 0.84591 | 0.108 |
43DAP/reference | 1.18195 | 0.575 |
47DAP/reference | 0.8957 | 0.154 |
52DAP/reference | 1.17452 | 0.24 |
57DAP/reference | 0.97709 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13581 | 0.106 |
17DAP/reference | 1.10424 | 0.522 |
27DAP/reference | 1.43653 | 0.312 |
39DAP/reference | 1.09323 | 0.451 |
41DAP/reference | 1.15832 | 0.276 |
42DAP/reference | 1.29048 | 0.114 |
43DAP/reference | 1.25412 | 0.19 |
47DAP/reference | 0.91018 | 0.063 |
52DAP/reference | 1.37672 | 0.119 |
57DAP/reference | 1.17849 | 0.121 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07436 | 0.966 |
26DAP/20DAP | 1.25475 | 0.562 |
34DAP/26DAP | 1.05702 | 0.961 |
51DAP/34DAP | 1.41311 | 0.377 |
52DAP/51DAP | 1.18091 | 0.367 |
53DAP/52DAP | 0.85879 | 0.527 |
55DAP/53DAP | 1.0267 | 1 |
57DAP/55DAP | 1.38513 | 0.584 |
62DAP/57DAP | 1.02672 | 0.935 |
68DAP/62DAP | 0.99683 | 0.885 |
68DAP/14DAP | 1.26603 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77483 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72811 | 0.274 |
Mature Green Tomato/Ripe Tomato | 0.60371 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.16003 | 0.278 |
Ripe Pepper/Ripe Tomato | 2.80359 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.61343 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99703 | 1 |
1-1-2/M82 | 0.8348 | 0.958 |
12-2/M82 | 1.02733 | |
12-4/M82 | 1.08346 | |
1-3/M82 | 0.69749 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08407 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.09921 | 0.938 |
4-1/M82 | 0.94901 | |
4-3-2/M82 | 1.05281 | |
4-3/M82 | 0.74745 | 0.397 |
5-3/M82 | 1.04199 | 1 |
6-2/M82 | 1.05039 | 1 |
6-3/M82 | 1.13691 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.00016 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.72713 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9963 | 1 |
DC3000/delta hrp 6h | 0.76694 | 0.95 |
DC3000/delta hrp 12h | 0.93277 | 1 |
DC3000/delta hrp 24h | 0.8818 | 0.269 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.54874 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94546 | 0.328 |
Exp 36h | 0.95276 | 0.879 |
Exp 60h | 1.03893 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06068 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 1.10731 | 1 |
transgenic ySAMdc/azygous control (red) | 1.05095 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9943 | 0.694 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92543 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87447 | 1 |
Manapal/WT (break) | 1.33819 | 0.381 |
Manapal/WT (red) | 1.06189 | 1 |
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