Expression of 1-1-1.2.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98995 | 0.788 |
27DAP/17DAP | 1.06014 | 0.885 |
39DAP/27DAP | 0.7925 | 0.41 |
41DAP/39DAP | 0.86979 | 0.591 |
42DAP/41DAP | 0.99566 | 1 |
43DAP/42DAP | 1.37651 | 0.252 |
47DAP/43DAP | 0.99535 | 0.804 |
52DAP/47DAP | 1.12137 | 0.984 |
57DAP/52DAP | 0.97715 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80924 | 0.036 |
17DAP/reference | 0.81155 | 0.12 |
27DAP/reference | 0.78534 | 0.275 |
39DAP/reference | 0.89742 | 0.081 |
41DAP/reference | 0.69217 | 0.267 |
42DAP/reference | 0.87069 | 0.088 |
43DAP/reference | 0.65419 | 0.36 |
47DAP/reference | 0.95182 | 0.392 |
52DAP/reference | 1.26809 | 0.766 |
57DAP/reference | 0.32307 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.47933 | 0.142 |
27DAP/17DAP | 0.88375 | 0.206 |
39DAP/27DAP | 0.68986 | 0.194 |
41DAP/39DAP | 0.93927 | 0.696 |
42DAP/41DAP | 0.9049 | 0.572 |
43DAP/42DAP | 1.15059 | 0.297 |
47DAP/43DAP | 0.8531 | 0.214 |
52DAP/47DAP | 0.84777 | 0.617 |
57DAP/52DAP | 0.9615 | 0.685 |
57DAP/7DAP | 1.20585 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30292 | 0.213 |
17DAP/reference | 1.28929 | 0.077 |
27DAP/reference | 1.0402 | 0.974 |
39DAP/reference | 1.20409 | 0.267 |
41DAP/reference | 1.26074 | 0.09 |
42DAP/reference | 1.03848 | 1 |
43DAP/reference | 1.26317 | 0.148 |
47DAP/reference | 1.06932 | 0.98 |
52DAP/reference | 1.00182 | 0.74 |
57DAP/reference | 1.10024 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19633 | 0.559 |
17DAP/reference | 1.00645 | 0.851 |
27DAP/reference | 0.8478 | 0.06 |
39DAP/reference | 1.02059 | 0.824 |
41DAP/reference | 0.96559 | 0.364 |
42DAP/reference | 0.83877 | 0.169 |
43DAP/reference | 0.67422 | 0.011 |
47DAP/reference | 0.76494 | 0.048 |
52DAP/reference | 0.94003 | 0.28 |
57DAP/reference | 0.77748 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 5.28588 | 0.021 |
17DAP/reference | 1.5304 | 0.166 |
27DAP/reference | 1.20471 | 0.216 |
39DAP/reference | 1.25339 | 0.227 |
41DAP/reference | 1.20834 | 0.257 |
42DAP/reference | 6.52183 | 0.011 |
43DAP/reference | 5.00538 | 0.013 |
47DAP/reference | 1.33629 | 0.081 |
52DAP/reference | 5.43829 | 0.067 |
57DAP/reference | 2.08829 | 0.111 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15747 | 0.586 |
26DAP/20DAP | 0.92724 | 1 |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 1.3887 | 0.044 |
52DAP/51DAP | 0.85384 | 1 |
53DAP/52DAP | 0.78231 | 0.371 |
55DAP/53DAP | 0.6291 | 0.181 |
57DAP/55DAP | 1.19806 | 0.854 |
62DAP/57DAP | 0.93834 | 0.994 |
68DAP/62DAP | 1.23091 | 0.148 |
68DAP/14DAP | 1.09659 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76743 | 0.137 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85837 | 0.329 |
Mature Green Tomato/Ripe Tomato | 2.07472 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.87985 | 0.105 |
Ripe Pepper/Ripe Tomato | 1.96052 | 1 |
Mature Eggplant/Ripe Tomato | 1.59448 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.60898 | 0.536 |
1-1-2/M82 | 1.0336 | 1 |
12-2/M82 | 0.92432 | |
12-4/M82 | 0.89246 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.73424 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.37178 | |
5-3/M82 | 0.70489 | |
6-2/M82 | 2.29088 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 2.12657 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.64995 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.18913 | 1 |
IL12-4/WTpooled | 0.91396 | 1 |
IL1-4/WTpooled | 1.16618 | 1 |
WT/WTpooled | 1.08339 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81635 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90517 | 1 |
DC3000/delta hrp 6h | 0.91859 | 0.95 |
DC3000/delta hrp 12h | 0.76326 | 1 |
DC3000/delta hrp 24h | 0.61821 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.54713 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.50921 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.76961 | 0.328 |
Exp 36h | 0.83409 | 0.661 |
Exp 60h | 0.75308 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02339 | 1 |
Var 0h | 1.01039 | 1 |
Var 12h I row2-row1 | 0.91725 | 0.705 |
Var 12h NI row2-row1 | 1.16584 | 1 |
Var 36h I row2-row1 | 1.0526 | 1 |
Var 36h NI row2-row1 | 1.25994 | 0.482 |
Var 60h I row2-row1 | 0.81774 | |
Var 60h NI row2-row1 | 1.28974 | 0.904 |
Time course 0hI-0hNI | 0.94824 | 0.623 |
Time course 12hI-12hNI | 0.97466 | 0.86 |
Time course 36hI-36hNI | 0.84572 | 0.081 |
Time course 60hI-60hNI | 0.19714 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05068 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 0.67573 | 0.122 |
transgenic ySAMdc/azygous control (red) | 1.44048 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89644 | 0.22 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.82263 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.68634 | 0.083 |
Manapal/WT (break) | 2.91902 | 0.183 |
Manapal/WT (red) | 2.27762 | 0.126 |
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