Expression of 1-1-1.2.5.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.868560.464
27DAP/17DAP0.996360.956
39DAP/27DAP1.30790.663
41DAP/39DAP1.027380.887
42DAP/41DAP1.042050.978
43DAP/42DAP1.120470.957
47DAP/43DAP0.93510.687
52DAP/47DAP0.714190.425
57DAP/52DAP0.964820.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.36470.026
17DAP/reference0.510530.02
27DAP/reference0.461260.016
39DAP/reference0.547860.044
41DAP/reference0.568590.031
42DAP/reference0.613080.002
43DAP/reference0.725660.148
47DAP/reference0.528480.001
52DAP/reference0.428290.019
57DAP/reference0.639170.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.171150.525
27DAP/17DAP1.035990.919
39DAP/27DAP1.014530.832
41DAP/39DAP1.077090.817
42DAP/41DAP0.875120.35
43DAP/42DAP0.831320.351
47DAP/43DAP0.989160.933
52DAP/47DAP0.903180.538
57DAP/52DAP1.275650.171
57DAP/7DAP0.95163

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.318940.047
17DAP/reference0.399240.011
27DAP/reference0.450380.01
39DAP/reference0.322650.011
41DAP/reference0.390730.009
42DAP/reference0.346470.01
43DAP/reference0.374350.011
47DAP/reference0.869870.222
52DAP/reference0.356950.012
57DAP/reference0.259170.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.316060.005
17DAP/reference0.491740.019
27DAP/reference0.402270.007
39DAP/reference0.440760.029
41DAP/reference0.65170.037
42DAP/reference0.465290.011
43DAP/reference0.535970.004
47DAP/reference0.542060.007
52DAP/reference0.454810.006
57DAP/reference0.309920.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.345720.02
17DAP/reference0.330560.011
27DAP/reference0.353780.023
39DAP/reference0.344140.007
41DAP/reference0.375380.019
42DAP/reference0.43520.014
43DAP/reference0.407460.017
47DAP/reference0.329650.004
52DAP/reference0.412640.047
57DAP/reference0.35150.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.551491
26DAP/20DAP1.827050.099
34DAP/26DAP0.966140.857
51DAP/34DAP0.845330.36
52DAP/51DAP1.081430.848
53DAP/52DAP1.023240.845
55DAP/53DAP0.922940.604
57DAP/55DAP0.841980.281
62DAP/57DAP7.440310.569
68DAP/62DAP0.83590.747
68DAP/14DAP0.884961

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.202380.055

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.685160.226
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.26532
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.100670.493
IL2-6/WTpooled1.073951
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.989861
IL12-4/WTpooled0.907210.71
IL1-4/WTpooled1.140411
WT/WTpooled0.826371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.178220.117

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.254970.875
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.674631
DC3000/delta hrp 24h1.370520.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.254250.043
DC3000 delta B/DC3000 delta AB1.001621

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.053041

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999291
Var 0h0.482091
Var 12h I row2-row10.946120.565
Var 12h NI row2-row11.243460.649
Var 36h I row2-row11.83770.742
Var 36h NI row2-row11.968231
Var 60h I row2-row11.04990.562
Var 60h NI row2-row10.697210.756
Time course 0hI-0hNI0.884620.151
Time course 12hI-12hNI1.042750.714
Time course 36hI-36hNI1.187890.218
Time course 60hI-60hNI1.068570.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)5.530090.325
transgenic ySAMdc/azygous control (breaker)0.883161
transgenic ySAMdc/azygous control (red)1.242130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048490.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.755080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.377680.307
Manapal/WT (break)1.154370.381
Manapal/WT (red)1.299420.413