Expression of 1-1-1.2.5.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86856 | 0.464 |
27DAP/17DAP | 0.99636 | 0.956 |
39DAP/27DAP | 1.3079 | 0.663 |
41DAP/39DAP | 1.02738 | 0.887 |
42DAP/41DAP | 1.04205 | 0.978 |
43DAP/42DAP | 1.12047 | 0.957 |
47DAP/43DAP | 0.9351 | 0.687 |
52DAP/47DAP | 0.71419 | 0.425 |
57DAP/52DAP | 0.96482 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.3647 | 0.026 |
17DAP/reference | 0.51053 | 0.02 |
27DAP/reference | 0.46126 | 0.016 |
39DAP/reference | 0.54786 | 0.044 |
41DAP/reference | 0.56859 | 0.031 |
42DAP/reference | 0.61308 | 0.002 |
43DAP/reference | 0.72566 | 0.148 |
47DAP/reference | 0.52848 | 0.001 |
52DAP/reference | 0.42829 | 0.019 |
57DAP/reference | 0.63917 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17115 | 0.525 |
27DAP/17DAP | 1.03599 | 0.919 |
39DAP/27DAP | 1.01453 | 0.832 |
41DAP/39DAP | 1.07709 | 0.817 |
42DAP/41DAP | 0.87512 | 0.35 |
43DAP/42DAP | 0.83132 | 0.351 |
47DAP/43DAP | 0.98916 | 0.933 |
52DAP/47DAP | 0.90318 | 0.538 |
57DAP/52DAP | 1.27565 | 0.171 |
57DAP/7DAP | 0.95163 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.31894 | 0.047 |
17DAP/reference | 0.39924 | 0.011 |
27DAP/reference | 0.45038 | 0.01 |
39DAP/reference | 0.32265 | 0.011 |
41DAP/reference | 0.39073 | 0.009 |
42DAP/reference | 0.34647 | 0.01 |
43DAP/reference | 0.37435 | 0.011 |
47DAP/reference | 0.86987 | 0.222 |
52DAP/reference | 0.35695 | 0.012 |
57DAP/reference | 0.25917 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.31606 | 0.005 |
17DAP/reference | 0.49174 | 0.019 |
27DAP/reference | 0.40227 | 0.007 |
39DAP/reference | 0.44076 | 0.029 |
41DAP/reference | 0.6517 | 0.037 |
42DAP/reference | 0.46529 | 0.011 |
43DAP/reference | 0.53597 | 0.004 |
47DAP/reference | 0.54206 | 0.007 |
52DAP/reference | 0.45481 | 0.006 |
57DAP/reference | 0.30992 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.34572 | 0.02 |
17DAP/reference | 0.33056 | 0.011 |
27DAP/reference | 0.35378 | 0.023 |
39DAP/reference | 0.34414 | 0.007 |
41DAP/reference | 0.37538 | 0.019 |
42DAP/reference | 0.4352 | 0.014 |
43DAP/reference | 0.40746 | 0.017 |
47DAP/reference | 0.32965 | 0.004 |
52DAP/reference | 0.41264 | 0.047 |
57DAP/reference | 0.3515 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.55149 | 1 |
26DAP/20DAP | 1.82705 | 0.099 |
34DAP/26DAP | 0.96614 | 0.857 |
51DAP/34DAP | 0.84533 | 0.36 |
52DAP/51DAP | 1.08143 | 0.848 |
53DAP/52DAP | 1.02324 | 0.845 |
55DAP/53DAP | 0.92294 | 0.604 |
57DAP/55DAP | 0.84198 | 0.281 |
62DAP/57DAP | 7.44031 | 0.569 |
68DAP/62DAP | 0.8359 | 0.747 |
68DAP/14DAP | 0.88496 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.20238 | 0.055 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.68516 | 0.226 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.26532 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10067 | 0.493 |
IL2-6/WTpooled | 1.07395 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98986 | 1 |
IL12-4/WTpooled | 0.90721 | 0.71 |
IL1-4/WTpooled | 1.14041 | 1 |
WT/WTpooled | 0.82637 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17822 | 0.117 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.25497 | 0.875 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.67463 | 1 |
DC3000/delta hrp 24h | 1.37052 | 0.192 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25425 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.00162 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.05304 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99929 | 1 |
Var 0h | 0.48209 | 1 |
Var 12h I row2-row1 | 0.94612 | 0.565 |
Var 12h NI row2-row1 | 1.24346 | 0.649 |
Var 36h I row2-row1 | 1.8377 | 0.742 |
Var 36h NI row2-row1 | 1.96823 | 1 |
Var 60h I row2-row1 | 1.0499 | 0.562 |
Var 60h NI row2-row1 | 0.69721 | 0.756 |
Time course 0hI-0hNI | 0.88462 | 0.151 |
Time course 12hI-12hNI | 1.04275 | 0.714 |
Time course 36hI-36hNI | 1.18789 | 0.218 |
Time course 60hI-60hNI | 1.06857 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 5.53009 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 0.88316 | 1 |
transgenic ySAMdc/azygous control (red) | 1.24213 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04849 | 0.125 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75508 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.37768 | 0.307 |
Manapal/WT (break) | 1.15437 | 0.381 |
Manapal/WT (red) | 1.29942 | 0.413 |
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