Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.2.5.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.38436	0.588
27DAP/17DAP	0.65846	0.254
39DAP/27DAP	0.93235	0.782
41DAP/39DAP	1.4492	0.642
42DAP/41DAP	1.22298	0.929
43DAP/42DAP	1.43681	0.991
47DAP/43DAP	0.80831	0.42
52DAP/47DAP	1.45176	0.63
57DAP/52DAP	1.05595	0.971

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.16984	1
17DAP/reference	1.60352	0.011
27DAP/reference	1.15826	0.405
39DAP/reference	1.47155	0.026
41DAP/reference	1.39609	0.338
42DAP/reference	1.16864	0.02
43DAP/reference	1.10371	0.175
47DAP/reference	1.02277	0.963
52DAP/reference	0.88412	0.065
57DAP/reference	0.8895	0.138

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.54353	0.363
27DAP/17DAP	1.21515	0.735
39DAP/27DAP	1.04167	0.799
41DAP/39DAP	1.07014	1
42DAP/41DAP	1.07819	0.836
43DAP/42DAP	1.13544	0.585
47DAP/43DAP	1.13175	0.884
52DAP/47DAP	0.85632	0.694
57DAP/52DAP	0.88024	0.424
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.12641
17DAP/reference	0.88274	0.028
27DAP/reference	0.87465	0.01
39DAP/reference	0.92351	0.083
41DAP/reference	0.8804	0.025
42DAP/reference	0.8709	0.014
43DAP/reference	0.8253	0.015
47DAP/reference	0.80491	0.03
52DAP/reference	0.78167	0.013
57DAP/reference	0.78034	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.51015
17DAP/reference	1.02817	0.673
27DAP/reference	0.60432	0.014
39DAP/reference	1.39213	0.047
41DAP/reference	1.83005	0.013
42DAP/reference	1.14973
43DAP/reference	0.82746	0.121
47DAP/reference	1.25823	1
52DAP/reference	1.57229	0.034
57DAP/reference	1.27964	0.654

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.18055	0.146
17DAP/reference	1.1848	0.563
27DAP/reference	0.9616	0.49
39DAP/reference	0.83107	0.222
41DAP/reference	0.86454	0.077
42DAP/reference	0.90388	0.02
43DAP/reference	0.90379	0.125
47DAP/reference	0.88635
52DAP/reference	0.85419	0.193
57DAP/reference	1.02611

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.91451	0.672
26DAP/20DAP	1.38769
34DAP/26DAP	1.35869
51DAP/34DAP	1.15432	0.962
52DAP/51DAP	N/A	N/A
53DAP/52DAP	0.8561	0.612
55DAP/53DAP	1.30143	0.755
57DAP/55DAP	2.70273
62DAP/57DAP	0.56039	0.681
68DAP/62DAP	0.94455
68DAP/14DAP	1.6326

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.02648	0.014

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.98254	1
IL2-6/WTpooled	0.96992	1
IL7-5/WTpooled	0.9256	1
IL7-3/WTpooled	0.98014	1
IL12-4/WTpooled	0.97073	0.581
IL1-4/WTpooled	1.03266	1
WT/WTpooled	0.99154	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.99434	1
DC3000/delta hrp 6h	0.85305
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	0.92549	0.851

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.92643	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A