Expression of 1-1-1.2.5.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.032840.977
27DAP/17DAP1.206820.825
39DAP/27DAP0.885020.325
41DAP/39DAP0.990260.944
42DAP/41DAP0.865651
43DAP/42DAP1.139670.861
47DAP/43DAP1.011970.943
52DAP/47DAP0.764070.381
57DAP/52DAP1.123150.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.449920.105
17DAP/reference1.402020.086
27DAP/reference1.029490.885
39DAP/reference0.916360.391
41DAP/reference1.332270.019
42DAP/reference1.325330.21
43DAP/reference1.15920.175
47DAP/reference0.96340.392
52DAP/reference0.825270.069
57DAP/reference0.797640.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.037310.774
27DAP/17DAP1.076070.951
39DAP/27DAP0.865930.04
41DAP/39DAP1.113380.663
42DAP/41DAP0.996080.887
43DAP/42DAP1.035550.413
47DAP/43DAP0.995040.99
52DAP/47DAP0.910060.645
57DAP/52DAP0.926030.555
57DAP/7DAP0.673711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.947070.124
27DAP/reference0.965970.094
39DAP/reference0.900480.02
41DAP/reference0.979320.235
42DAP/reference0.98980.612
43DAP/reference0.957410.334
47DAP/reference0.73580.383
52DAP/reference0.858810.016
57DAP/reference0.91890.097

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.785530.039
17DAP/reference1.153760.531
27DAP/reference1.196341
39DAP/reference0.928540.348
41DAP/reference1.163250.277
42DAP/reference0.829080.189
43DAP/reference1.109581
47DAP/reference1.114960.377
52DAP/reference1.097490.471
57DAP/reference0.95330.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02390.723
17DAP/reference1.104990.65
27DAP/referenceN/AN/A
39DAP/reference1.005090.962
41DAP/reference1.60550.621
42DAP/reference1.192840.635
43DAP/reference0.938420.614
47DAP/reference0.977730.538
52DAP/reference0.941790.482
57DAP/reference0.729140.208

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019821
26DAP/20DAP1.005951
34DAP/26DAP1.056351
51DAP/34DAP1.044410.909
52DAP/51DAP1.01850.888
53DAP/52DAP1.057710.806
55DAP/53DAP0.938230.709
57DAP/55DAP1.100080.969
62DAP/57DAP1.451160.622
68DAP/62DAP0.619480.152
68DAP/14DAP0.85461

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.876930.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.168281
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato7.49841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.960350.944
1-1-2/M820.942541
12-2/M82N/AN/A
12-4/M820.873211
1-3/M82N/AN/A
2-1-1/M820.72798
2-1/M82N/AN/A
2-6/M821.276310.505
3-2/M821.08138
4-1-1/M821.32525
4-1/M820.822680.665
4-3-2/M820.881581
4-3/M82N/AN/A
5-3/M820.908340.642
6-2/M821.19787
6-3/M82N/AN/A
7-1/M820.92646
7-2/M821.03038
9-3-2/M820.927530.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.858330.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.8550.559
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.002151
WT/WTpooled1.50867

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.878810.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.075860.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.228911
DC3000/delta hrp 24h0.335440.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.558910.025
DC3000 delta B/DC3000 delta AB0.570990.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.07251
Var 0h0.542251
Var 12h I row2-row10.920510.418
Var 12h NI row2-row11.005391
Var 36h I row2-row10.935240.374
Var 36h NI row2-row11.246590.482
Var 60h I row2-row10.986620.952
Var 60h NI row2-row11.138810.904
Time course 0hI-0hNI0.97250.861
Time course 12hI-12hNI1.082430.213
Time course 36hI-36hNI0.978930.589
Time course 60hI-60hNI0.310550.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.602651
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.067110.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.406130.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.007011
Manapal/WT (red)2.51390.15