Expression of 1-1-1.2.5.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03284 | 0.977 |
27DAP/17DAP | 1.20682 | 0.825 |
39DAP/27DAP | 0.88502 | 0.325 |
41DAP/39DAP | 0.99026 | 0.944 |
42DAP/41DAP | 0.86565 | 1 |
43DAP/42DAP | 1.13967 | 0.861 |
47DAP/43DAP | 1.01197 | 0.943 |
52DAP/47DAP | 0.76407 | 0.381 |
57DAP/52DAP | 1.12315 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44992 | 0.105 |
17DAP/reference | 1.40202 | 0.086 |
27DAP/reference | 1.02949 | 0.885 |
39DAP/reference | 0.91636 | 0.391 |
41DAP/reference | 1.33227 | 0.019 |
42DAP/reference | 1.32533 | 0.21 |
43DAP/reference | 1.1592 | 0.175 |
47DAP/reference | 0.9634 | 0.392 |
52DAP/reference | 0.82527 | 0.069 |
57DAP/reference | 0.79764 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03731 | 0.774 |
27DAP/17DAP | 1.07607 | 0.951 |
39DAP/27DAP | 0.86593 | 0.04 |
41DAP/39DAP | 1.11338 | 0.663 |
42DAP/41DAP | 0.99608 | 0.887 |
43DAP/42DAP | 1.03555 | 0.413 |
47DAP/43DAP | 0.99504 | 0.99 |
52DAP/47DAP | 0.91006 | 0.645 |
57DAP/52DAP | 0.92603 | 0.555 |
57DAP/7DAP | 0.67371 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.94707 | 0.124 |
27DAP/reference | 0.96597 | 0.094 |
39DAP/reference | 0.90048 | 0.02 |
41DAP/reference | 0.97932 | 0.235 |
42DAP/reference | 0.9898 | 0.612 |
43DAP/reference | 0.95741 | 0.334 |
47DAP/reference | 0.7358 | 0.383 |
52DAP/reference | 0.85881 | 0.016 |
57DAP/reference | 0.9189 | 0.097 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78553 | 0.039 |
17DAP/reference | 1.15376 | 0.531 |
27DAP/reference | 1.19634 | 1 |
39DAP/reference | 0.92854 | 0.348 |
41DAP/reference | 1.16325 | 0.277 |
42DAP/reference | 0.82908 | 0.189 |
43DAP/reference | 1.10958 | 1 |
47DAP/reference | 1.11496 | 0.377 |
52DAP/reference | 1.09749 | 0.471 |
57DAP/reference | 0.9533 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0239 | 0.723 |
17DAP/reference | 1.10499 | 0.65 |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.00509 | 0.962 |
41DAP/reference | 1.6055 | 0.621 |
42DAP/reference | 1.19284 | 0.635 |
43DAP/reference | 0.93842 | 0.614 |
47DAP/reference | 0.97773 | 0.538 |
52DAP/reference | 0.94179 | 0.482 |
57DAP/reference | 0.72914 | 0.208 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01982 | 1 |
26DAP/20DAP | 1.00595 | 1 |
34DAP/26DAP | 1.05635 | 1 |
51DAP/34DAP | 1.04441 | 0.909 |
52DAP/51DAP | 1.0185 | 0.888 |
53DAP/52DAP | 1.05771 | 0.806 |
55DAP/53DAP | 0.93823 | 0.709 |
57DAP/55DAP | 1.10008 | 0.969 |
62DAP/57DAP | 1.45116 | 0.622 |
68DAP/62DAP | 0.61948 | 0.152 |
68DAP/14DAP | 0.85461 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87693 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.16828 | 1 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 7.49841 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96035 | 0.944 |
1-1-2/M82 | 0.94254 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.87321 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.72798 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.27631 | 0.505 |
3-2/M82 | 1.08138 | |
4-1-1/M82 | 1.32525 | |
4-1/M82 | 0.82268 | 0.665 |
4-3-2/M82 | 0.88158 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.90834 | 0.642 |
6-2/M82 | 1.19787 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.92646 | |
7-2/M82 | 1.03038 | |
9-3-2/M82 | 0.92753 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85833 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.855 | 0.559 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.00215 | 1 |
WT/WTpooled | 1.50867 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87881 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07586 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.22891 | 1 |
DC3000/delta hrp 24h | 0.33544 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.55891 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.57099 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0725 | 1 |
Var 0h | 0.54225 | 1 |
Var 12h I row2-row1 | 0.92051 | 0.418 |
Var 12h NI row2-row1 | 1.00539 | 1 |
Var 36h I row2-row1 | 0.93524 | 0.374 |
Var 36h NI row2-row1 | 1.24659 | 0.482 |
Var 60h I row2-row1 | 0.98662 | 0.952 |
Var 60h NI row2-row1 | 1.13881 | 0.904 |
Time course 0hI-0hNI | 0.9725 | 0.861 |
Time course 12hI-12hNI | 1.08243 | 0.213 |
Time course 36hI-36hNI | 0.97893 | 0.589 |
Time course 60hI-60hNI | 0.31055 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.60265 | 1 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06711 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.40613 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.00701 | 1 |
Manapal/WT (red) | 2.5139 | 0.15 |
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