Expression of 1-1-1.2.6.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.054350.878
27DAP/17DAP1.051011
39DAP/27DAP1.133951
41DAP/39DAP0.885620.63
42DAP/41DAP1.032491
43DAP/42DAP1.190380.875
47DAP/43DAP0.991690.913
52DAP/47DAP0.946770.758
57DAP/52DAP1.107110.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.769960.027
17DAP/reference0.95230.342
27DAP/reference0.920680.286
39DAP/reference0.93710.333
41DAP/reference0.802290.013
42DAP/reference0.879920.054
43DAP/reference0.97520.611
47DAP/reference1.00630.764
52DAP/reference0.975050.504
57DAP/reference1.200560.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.155290.762
27DAP/17DAP1.113330.579
39DAP/27DAP0.937270.607
41DAP/39DAP1.203850.065
42DAP/41DAP1.189090.508
43DAP/42DAP0.937590.503
47DAP/43DAP1.014810.926
52DAP/47DAP1.021311
57DAP/52DAP0.992160.823
57DAP/7DAP0.97804

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058690.613
17DAP/reference0.951610.389
27DAP/reference1.072821
39DAP/reference1.048281
41DAP/reference0.829830.153
42DAP/reference1.131580.405
43DAP/reference1.248690.483
47DAP/reference1.236760.084
52DAP/reference0.989830.571
57DAP/reference1.076220.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.80990.09
17DAP/reference0.833350.033
27DAP/reference0.949130.393
39DAP/reference0.984080.526
41DAP/reference1.012260.749
42DAP/reference0.923080.189
43DAP/reference0.721430.037
47DAP/reference0.904060.075
52DAP/reference0.95190.407
57DAP/reference0.974520.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.988360.653
17DAP/reference0.924360.452
27DAP/reference1.083180.805
39DAP/reference0.986120.643
41DAP/reference0.83960.058
42DAP/reference0.935670.361
43DAP/reference0.872450.066
47DAP/reference0.944260.335
52DAP/reference1.012380.888
57DAP/reference1.032430.909

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.071371
26DAP/20DAP1.941380.098
34DAP/26DAP0.849880.753
51DAP/34DAP1.436360.052
52DAP/51DAP0.891341
53DAP/52DAP1.190190.697
55DAP/53DAP1.037711
57DAP/55DAP1.313510.178
62DAP/57DAP0.8930.994
68DAP/62DAP1.326020.278
68DAP/14DAP1.995890.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.366450.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.81263
Mature Green Tomato/Ripe Tomato1.449060.523
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.31377
Mature Eggplant/Ripe Tomato1.42917

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.45537
12-2/M82N/AN/A
12-4/M823.00537
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.95853
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.030081
IL2-6/WTpooled1.571341
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.019371
IL12-4/WTpooled0.952051
IL1-4/WTpooled0.947380.562
WT/WTpooled1.000851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.00661

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.103250.921
DC3000/delta hrp 6h0.838870.95
DC3000/delta hrp 12h0.806931
DC3000/delta hrp 24h0.972760.887

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.636470.042
DC3000 delta B/DC3000 delta AB1.240860.304

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.006581
Exp 36h3.6780.326
Exp 60h0.799010.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.051941
Var 0h0.369750.457
Var 12h I row2-row11.090660.58
Var 12h NI row2-row11.339220.34
Var 36h I row2-row11.106660.908
Var 36h NI row2-row10.830860.421
Var 60h I row2-row10.727460.292
Var 60h NI row2-row10.857710.431
Time course 0hI-0hNI0.941180.519
Time course 12hI-12hNI1.161720.026
Time course 36hI-36hNI1.266140.015
Time course 60hI-60hNI1.715260.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.501330.264
transgenic ySAMdc/azygous control (breaker)2.148260.248
transgenic ySAMdc/azygous control (red)1.283651

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.997540.832

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.778580.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.231370.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A