Expression of 1-1-1.2.6.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05435 | 0.878 |
27DAP/17DAP | 1.05101 | 1 |
39DAP/27DAP | 1.13395 | 1 |
41DAP/39DAP | 0.88562 | 0.63 |
42DAP/41DAP | 1.03249 | 1 |
43DAP/42DAP | 1.19038 | 0.875 |
47DAP/43DAP | 0.99169 | 0.913 |
52DAP/47DAP | 0.94677 | 0.758 |
57DAP/52DAP | 1.10711 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76996 | 0.027 |
17DAP/reference | 0.9523 | 0.342 |
27DAP/reference | 0.92068 | 0.286 |
39DAP/reference | 0.9371 | 0.333 |
41DAP/reference | 0.80229 | 0.013 |
42DAP/reference | 0.87992 | 0.054 |
43DAP/reference | 0.9752 | 0.611 |
47DAP/reference | 1.0063 | 0.764 |
52DAP/reference | 0.97505 | 0.504 |
57DAP/reference | 1.20056 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15529 | 0.762 |
27DAP/17DAP | 1.11333 | 0.579 |
39DAP/27DAP | 0.93727 | 0.607 |
41DAP/39DAP | 1.20385 | 0.065 |
42DAP/41DAP | 1.18909 | 0.508 |
43DAP/42DAP | 0.93759 | 0.503 |
47DAP/43DAP | 1.01481 | 0.926 |
52DAP/47DAP | 1.02131 | 1 |
57DAP/52DAP | 0.99216 | 0.823 |
57DAP/7DAP | 0.97804 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05869 | 0.613 |
17DAP/reference | 0.95161 | 0.389 |
27DAP/reference | 1.07282 | 1 |
39DAP/reference | 1.04828 | 1 |
41DAP/reference | 0.82983 | 0.153 |
42DAP/reference | 1.13158 | 0.405 |
43DAP/reference | 1.24869 | 0.483 |
47DAP/reference | 1.23676 | 0.084 |
52DAP/reference | 0.98983 | 0.571 |
57DAP/reference | 1.07622 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8099 | 0.09 |
17DAP/reference | 0.83335 | 0.033 |
27DAP/reference | 0.94913 | 0.393 |
39DAP/reference | 0.98408 | 0.526 |
41DAP/reference | 1.01226 | 0.749 |
42DAP/reference | 0.92308 | 0.189 |
43DAP/reference | 0.72143 | 0.037 |
47DAP/reference | 0.90406 | 0.075 |
52DAP/reference | 0.9519 | 0.407 |
57DAP/reference | 0.97452 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98836 | 0.653 |
17DAP/reference | 0.92436 | 0.452 |
27DAP/reference | 1.08318 | 0.805 |
39DAP/reference | 0.98612 | 0.643 |
41DAP/reference | 0.8396 | 0.058 |
42DAP/reference | 0.93567 | 0.361 |
43DAP/reference | 0.87245 | 0.066 |
47DAP/reference | 0.94426 | 0.335 |
52DAP/reference | 1.01238 | 0.888 |
57DAP/reference | 1.03243 | 0.909 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07137 | 1 |
26DAP/20DAP | 1.94138 | 0.098 |
34DAP/26DAP | 0.84988 | 0.753 |
51DAP/34DAP | 1.43636 | 0.052 |
52DAP/51DAP | 0.89134 | 1 |
53DAP/52DAP | 1.19019 | 0.697 |
55DAP/53DAP | 1.03771 | 1 |
57DAP/55DAP | 1.31351 | 0.178 |
62DAP/57DAP | 0.893 | 0.994 |
68DAP/62DAP | 1.32602 | 0.278 |
68DAP/14DAP | 1.99589 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.36645 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81263 | |
Mature Green Tomato/Ripe Tomato | 1.44906 | 0.523 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.31377 | |
Mature Eggplant/Ripe Tomato | 1.42917 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.45537 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 3.00537 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.95853 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03008 | 1 |
IL2-6/WTpooled | 1.57134 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01937 | 1 |
IL12-4/WTpooled | 0.95205 | 1 |
IL1-4/WTpooled | 0.94738 | 0.562 |
WT/WTpooled | 1.00085 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0066 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10325 | 0.921 |
DC3000/delta hrp 6h | 0.83887 | 0.95 |
DC3000/delta hrp 12h | 0.80693 | 1 |
DC3000/delta hrp 24h | 0.97276 | 0.887 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.63647 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.24086 | 0.304 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00658 | 1 |
Exp 36h | 3.678 | 0.326 |
Exp 60h | 0.79901 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05194 | 1 |
Var 0h | 0.36975 | 0.457 |
Var 12h I row2-row1 | 1.09066 | 0.58 |
Var 12h NI row2-row1 | 1.33922 | 0.34 |
Var 36h I row2-row1 | 1.10666 | 0.908 |
Var 36h NI row2-row1 | 0.83086 | 0.421 |
Var 60h I row2-row1 | 0.72746 | 0.292 |
Var 60h NI row2-row1 | 0.85771 | 0.431 |
Time course 0hI-0hNI | 0.94118 | 0.519 |
Time course 12hI-12hNI | 1.16172 | 0.026 |
Time course 36hI-36hNI | 1.26614 | 0.015 |
Time course 60hI-60hNI | 1.71526 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.50133 | 0.264 |
transgenic ySAMdc/azygous control (breaker) | 2.14826 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.28365 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99754 | 0.832 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77858 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.23137 | 0.307 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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