Expression of 1-1-1.2.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941190.683
27DAP/17DAP1.413610.735
39DAP/27DAP2.188170.065
41DAP/39DAP1.68940.265
42DAP/41DAP2.509370.021
43DAP/42DAP1.639990.726
47DAP/43DAP1.227310.502
52DAP/47DAP0.662220.22
57DAP/52DAP1.170930.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.194560.052
17DAP/reference1.172020.031
27DAP/reference0.921360.249
39DAP/reference0.965750.554
41DAP/reference1.004841
42DAP/reference0.923080.078
43DAP/reference1.082820.057
47DAP/reference0.915290.035
52DAP/reference0.765450.024
57DAP/reference0.769660.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.006271
27DAP/17DAP1.071710.842
39DAP/27DAP3.056770.043
41DAP/39DAP0.380890.016
42DAP/41DAP2.212140.002
43DAP/42DAP3.363970.015
47DAP/43DAP0.895090.577
52DAP/47DAP1.103690.939
57DAP/52DAP1.311890.225
57DAP/7DAP2.10673

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093551
17DAP/reference0.870430.253
27DAP/reference1.023941
39DAP/reference1.234630.371
41DAP/reference1.256270.147
42DAP/reference1.056760.889
43DAP/reference1.061260.746
47DAP/reference1.131990.561
52DAP/reference1.267720.171
57DAP/reference1.084150.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139420.241
17DAP/reference1.112080.124
27DAP/reference0.975780.452
39DAP/reference1.343620.097
41DAP/reference1.245640.183
42DAP/reference0.938570.261
43DAP/reference1.193030.272
47DAP/reference1.074680.247
52DAP/reference1.045240.559
57DAP/reference1.209840.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.825690.197
17DAP/reference0.91990.571
27DAP/reference0.9276
39DAP/reference1.335060.307
41DAP/reference0.8740.459
42DAP/reference1.265950.923
43DAP/reference1.075071
47DAP/reference0.945940.348
52DAP/reference1.298860.165
57DAP/reference0.641150.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.97821
26DAP/20DAP0.936460.317
34DAP/26DAP1.200580.819
51DAP/34DAP2.982020.032
52DAP/51DAP0.761730.151
53DAP/52DAP1.867460.043
55DAP/53DAP0.894680.169
57DAP/55DAP1.454180.643
62DAP/57DAP0.780190.871
68DAP/62DAP0.825740.429
68DAP/14DAP0.939291

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.972790.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.673210.17
Mature Green Tomato/Ripe Tomato0.158050.016
Immature Eggplant/Mature Eggplant5.620480.05
Ripe Pepper/Ripe Tomato0.510250.224
Mature Eggplant/Ripe Tomato0.765441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.283410.742
1-1-2/M821.450420.977
12-2/M821.220541
12-4/M821.177251
1-3/M822.29308
2-1-1/M820.924940.683
2-1/M820.736740.519
2-6/M821.056641
3-2/M821.096020.549
4-1-1/M820.573150.959
4-1/M821.629491
4-3-2/M821.037171
4-3/M821.00671
5-3/M820.870931
6-2/M821.2620.195
6-3/M821.112971
7-1/M820.87831
7-2/M821.035860.324
9-3-2/M820.707440.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.004511
IL2-6/WTpooled0.907851
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.43440.362
IL12-4/WTpooled1.038340.891
IL1-4/WTpooled0.976451
WT/WTpooled0.981821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.100771

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.971251
DC3000/delta hrp 6h1.305381
DC3000/delta hrp 12h1.386741
DC3000/delta hrp 24h0.557760.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.301290.042
DC3000 delta B/DC3000 delta AB1.12240.321

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085571
Exp 36h1.945760.409
Exp 60h1.436010.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.941671
Var 0h1.144030.339
Var 12h I row2-row11.026120.544
Var 12h NI row2-row10.889070.488
Var 36h I row2-row10.838851
Var 36h NI row2-row11.100751
Var 60h I row2-row11.13781
Var 60h NI row2-row11.148540.904
Time course 0hI-0hNI1.044340.833
Time course 12hI-12hNI1.003510.892
Time course 36hI-36hNI1.130550.114
Time course 60hI-60hNI1.267230.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.120990.305
transgenic ySAMdc/azygous control (breaker)0.393650.131
transgenic ySAMdc/azygous control (red)0.924561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.058880.045

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.617320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.783051
Manapal/WT (break)0.784750.333
Manapal/WT (red)1.110760.413