Expression of 1-1-1.2.6.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94119 | 0.683 |
27DAP/17DAP | 1.41361 | 0.735 |
39DAP/27DAP | 2.18817 | 0.065 |
41DAP/39DAP | 1.6894 | 0.265 |
42DAP/41DAP | 2.50937 | 0.021 |
43DAP/42DAP | 1.63999 | 0.726 |
47DAP/43DAP | 1.22731 | 0.502 |
52DAP/47DAP | 0.66222 | 0.22 |
57DAP/52DAP | 1.17093 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19456 | 0.052 |
17DAP/reference | 1.17202 | 0.031 |
27DAP/reference | 0.92136 | 0.249 |
39DAP/reference | 0.96575 | 0.554 |
41DAP/reference | 1.00484 | 1 |
42DAP/reference | 0.92308 | 0.078 |
43DAP/reference | 1.08282 | 0.057 |
47DAP/reference | 0.91529 | 0.035 |
52DAP/reference | 0.76545 | 0.024 |
57DAP/reference | 0.76966 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00627 | 1 |
27DAP/17DAP | 1.07171 | 0.842 |
39DAP/27DAP | 3.05677 | 0.043 |
41DAP/39DAP | 0.38089 | 0.016 |
42DAP/41DAP | 2.21214 | 0.002 |
43DAP/42DAP | 3.36397 | 0.015 |
47DAP/43DAP | 0.89509 | 0.577 |
52DAP/47DAP | 1.10369 | 0.939 |
57DAP/52DAP | 1.31189 | 0.225 |
57DAP/7DAP | 2.10673 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09355 | 1 |
17DAP/reference | 0.87043 | 0.253 |
27DAP/reference | 1.02394 | 1 |
39DAP/reference | 1.23463 | 0.371 |
41DAP/reference | 1.25627 | 0.147 |
42DAP/reference | 1.05676 | 0.889 |
43DAP/reference | 1.06126 | 0.746 |
47DAP/reference | 1.13199 | 0.561 |
52DAP/reference | 1.26772 | 0.171 |
57DAP/reference | 1.08415 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13942 | 0.241 |
17DAP/reference | 1.11208 | 0.124 |
27DAP/reference | 0.97578 | 0.452 |
39DAP/reference | 1.34362 | 0.097 |
41DAP/reference | 1.24564 | 0.183 |
42DAP/reference | 0.93857 | 0.261 |
43DAP/reference | 1.19303 | 0.272 |
47DAP/reference | 1.07468 | 0.247 |
52DAP/reference | 1.04524 | 0.559 |
57DAP/reference | 1.20984 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82569 | 0.197 |
17DAP/reference | 0.9199 | 0.571 |
27DAP/reference | 0.9276 | |
39DAP/reference | 1.33506 | 0.307 |
41DAP/reference | 0.874 | 0.459 |
42DAP/reference | 1.26595 | 0.923 |
43DAP/reference | 1.07507 | 1 |
47DAP/reference | 0.94594 | 0.348 |
52DAP/reference | 1.29886 | 0.165 |
57DAP/reference | 0.64115 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9782 | 1 |
26DAP/20DAP | 0.93646 | 0.317 |
34DAP/26DAP | 1.20058 | 0.819 |
51DAP/34DAP | 2.98202 | 0.032 |
52DAP/51DAP | 0.76173 | 0.151 |
53DAP/52DAP | 1.86746 | 0.043 |
55DAP/53DAP | 0.89468 | 0.169 |
57DAP/55DAP | 1.45418 | 0.643 |
62DAP/57DAP | 0.78019 | 0.871 |
68DAP/62DAP | 0.82574 | 0.429 |
68DAP/14DAP | 0.93929 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.97279 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67321 | 0.17 |
Mature Green Tomato/Ripe Tomato | 0.15805 | 0.016 |
Immature Eggplant/Mature Eggplant | 5.62048 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.51025 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.76544 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.28341 | 0.742 |
1-1-2/M82 | 1.45042 | 0.977 |
12-2/M82 | 1.22054 | 1 |
12-4/M82 | 1.17725 | 1 |
1-3/M82 | 2.29308 | |
2-1-1/M82 | 0.92494 | 0.683 |
2-1/M82 | 0.73674 | 0.519 |
2-6/M82 | 1.05664 | 1 |
3-2/M82 | 1.09602 | 0.549 |
4-1-1/M82 | 0.57315 | 0.959 |
4-1/M82 | 1.62949 | 1 |
4-3-2/M82 | 1.03717 | 1 |
4-3/M82 | 1.0067 | 1 |
5-3/M82 | 0.87093 | 1 |
6-2/M82 | 1.262 | 0.195 |
6-3/M82 | 1.11297 | 1 |
7-1/M82 | 0.87831 | |
7-2/M82 | 1.03586 | 0.324 |
9-3-2/M82 | 0.70744 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00451 | 1 |
IL2-6/WTpooled | 0.90785 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.4344 | 0.362 |
IL12-4/WTpooled | 1.03834 | 0.891 |
IL1-4/WTpooled | 0.97645 | 1 |
WT/WTpooled | 0.98182 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10077 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97125 | 1 |
DC3000/delta hrp 6h | 1.30538 | 1 |
DC3000/delta hrp 12h | 1.38674 | 1 |
DC3000/delta hrp 24h | 0.55776 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.30129 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.1224 | 0.321 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08557 | 1 |
Exp 36h | 1.94576 | 0.409 |
Exp 60h | 1.43601 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94167 | 1 |
Var 0h | 1.14403 | 0.339 |
Var 12h I row2-row1 | 1.02612 | 0.544 |
Var 12h NI row2-row1 | 0.88907 | 0.488 |
Var 36h I row2-row1 | 0.83885 | 1 |
Var 36h NI row2-row1 | 1.10075 | 1 |
Var 60h I row2-row1 | 1.1378 | 1 |
Var 60h NI row2-row1 | 1.14854 | 0.904 |
Time course 0hI-0hNI | 1.04434 | 0.833 |
Time course 12hI-12hNI | 1.00351 | 0.892 |
Time course 36hI-36hNI | 1.13055 | 0.114 |
Time course 60hI-60hNI | 1.26723 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12099 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 0.39365 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.92456 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05888 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.61732 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.78305 | 1 |
Manapal/WT (break) | 0.78475 | 0.333 |
Manapal/WT (red) | 1.11076 | 0.413 |
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