Expression of 1-1-1.2.6.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.636130.498
27DAP/17DAP1.761680.38
39DAP/27DAP4.649940.02
41DAP/39DAP2.515510.133
42DAP/41DAP2.941220.023
43DAP/42DAP2.629960.703
47DAP/43DAP1.229540.542
52DAP/47DAP0.626130.147
57DAP/52DAP1.51440.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.895710.238
17DAP/reference0.925540.393
27DAP/reference0.832790.134
39DAP/reference1.072560.077
41DAP/reference1.056490.516
42DAP/reference1.30230.182
43DAP/reference1.163910.126
47DAP/reference1.237890.794
52DAP/reference0.791540.017
57DAP/reference0.838850.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.127830.63
27DAP/17DAP1.0780.768
39DAP/27DAP3.706710.034
41DAP/39DAP0.431630.016
42DAP/41DAP2.51670.005
43DAP/42DAP4.224480.015
47DAP/43DAP0.757330.048
52DAP/47DAP0.986980.901
57DAP/52DAP1.074650.813
57DAP/7DAP5.140880.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.556630.1
17DAP/reference0.608080.011
27DAP/reference0.877040.022
39DAP/reference0.873570.17
41DAP/reference0.768640.032
42DAP/reference0.88540.16
43DAP/reference0.806750.034
47DAP/reference1.151310.229
52DAP/reference0.833360.097
57DAP/reference0.767420.025

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.734140.083
17DAP/reference0.98950.659
27DAP/reference1.090520.933
39DAP/reference0.932060.359
41DAP/reference1.030770.57
42DAP/reference1.203230.302
43DAP/reference1.500820.014
47DAP/reference1.35880.008
52DAP/reference0.905760.22
57DAP/reference0.909270.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.642510.042
17DAP/reference0.963140.579
27DAP/reference0.749960.048
39DAP/reference0.910660.271
41DAP/reference1.102310.657
42DAP/reference1.359510.019
43DAP/reference1.342580.084
47DAP/reference1.693130.005
52DAP/reference1.328230.363
57DAP/reference0.977630.553

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.145750.966
26DAP/20DAP1.168451
34DAP/26DAP1.306820.819
51DAP/34DAP0.970950.807
52DAP/51DAP1.793610.207
53DAP/52DAP1.159370.753
55DAP/53DAP1.171390.666
57DAP/55DAP1.00980.875
62DAP/57DAP8.997190.723
68DAP/62DAPN/AN/A
68DAP/14DAP0.92314

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker76.62130.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.21861
Mature Green Tomato/Ripe Tomato0.131580.018
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.118530.224
Mature Eggplant/Ripe Tomato0.855531

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.188970.877
1-1-2/M821.132891
12-2/M821.150421
12-4/M821.055121
1-3/M822.456180.479
2-1-1/M820.944780.465
2-1/M820.92241
2-6/M820.956331
3-2/M821.218530.549
4-1-1/M820.842141
4-1/M821.787681
4-3-2/M820.943981
4-3/M820.918591
5-3/M820.971291
6-2/M821.001831
6-3/M821.038981
7-1/M820.948210.509
7-2/M821.069811
9-3-2/M820.68357

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.873271
IL2-6/WTpooled1.030611
IL7-5/WTpooled1.51382
IL7-3/WTpooled0.987541
IL12-4/WTpooled0.878181
IL1-4/WTpooled0.834420.444
WT/WTpooled1.072981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.016771

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.106840.846
DC3000/delta hrp 6h1.002160.95
DC3000/delta hrp 12h0.954121
DC3000/delta hrp 24h0.835770.126

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.649570.029
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.780321
Exp 36h0.970731
Exp 60h0.600860.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.250280.936
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.948760.282
transgenic ySAMdc/azygous control (breaker)0.937480.49
transgenic ySAMdc/azygous control (red)1.108420.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996730.832

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.455040.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.862821
Manapal/WT (break)1.097221
Manapal/WT (red)0.850140.503