Expression of 1-1-1.2.6.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.63613 | 0.498 |
27DAP/17DAP | 1.76168 | 0.38 |
39DAP/27DAP | 4.64994 | 0.02 |
41DAP/39DAP | 2.51551 | 0.133 |
42DAP/41DAP | 2.94122 | 0.023 |
43DAP/42DAP | 2.62996 | 0.703 |
47DAP/43DAP | 1.22954 | 0.542 |
52DAP/47DAP | 0.62613 | 0.147 |
57DAP/52DAP | 1.5144 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89571 | 0.238 |
17DAP/reference | 0.92554 | 0.393 |
27DAP/reference | 0.83279 | 0.134 |
39DAP/reference | 1.07256 | 0.077 |
41DAP/reference | 1.05649 | 0.516 |
42DAP/reference | 1.3023 | 0.182 |
43DAP/reference | 1.16391 | 0.126 |
47DAP/reference | 1.23789 | 0.794 |
52DAP/reference | 0.79154 | 0.017 |
57DAP/reference | 0.83885 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12783 | 0.63 |
27DAP/17DAP | 1.078 | 0.768 |
39DAP/27DAP | 3.70671 | 0.034 |
41DAP/39DAP | 0.43163 | 0.016 |
42DAP/41DAP | 2.5167 | 0.005 |
43DAP/42DAP | 4.22448 | 0.015 |
47DAP/43DAP | 0.75733 | 0.048 |
52DAP/47DAP | 0.98698 | 0.901 |
57DAP/52DAP | 1.07465 | 0.813 |
57DAP/7DAP | 5.14088 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.55663 | 0.1 |
17DAP/reference | 0.60808 | 0.011 |
27DAP/reference | 0.87704 | 0.022 |
39DAP/reference | 0.87357 | 0.17 |
41DAP/reference | 0.76864 | 0.032 |
42DAP/reference | 0.8854 | 0.16 |
43DAP/reference | 0.80675 | 0.034 |
47DAP/reference | 1.15131 | 0.229 |
52DAP/reference | 0.83336 | 0.097 |
57DAP/reference | 0.76742 | 0.025 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73414 | 0.083 |
17DAP/reference | 0.9895 | 0.659 |
27DAP/reference | 1.09052 | 0.933 |
39DAP/reference | 0.93206 | 0.359 |
41DAP/reference | 1.03077 | 0.57 |
42DAP/reference | 1.20323 | 0.302 |
43DAP/reference | 1.50082 | 0.014 |
47DAP/reference | 1.3588 | 0.008 |
52DAP/reference | 0.90576 | 0.22 |
57DAP/reference | 0.90927 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.64251 | 0.042 |
17DAP/reference | 0.96314 | 0.579 |
27DAP/reference | 0.74996 | 0.048 |
39DAP/reference | 0.91066 | 0.271 |
41DAP/reference | 1.10231 | 0.657 |
42DAP/reference | 1.35951 | 0.019 |
43DAP/reference | 1.34258 | 0.084 |
47DAP/reference | 1.69313 | 0.005 |
52DAP/reference | 1.32823 | 0.363 |
57DAP/reference | 0.97763 | 0.553 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14575 | 0.966 |
26DAP/20DAP | 1.16845 | 1 |
34DAP/26DAP | 1.30682 | 0.819 |
51DAP/34DAP | 0.97095 | 0.807 |
52DAP/51DAP | 1.79361 | 0.207 |
53DAP/52DAP | 1.15937 | 0.753 |
55DAP/53DAP | 1.17139 | 0.666 |
57DAP/55DAP | 1.0098 | 0.875 |
62DAP/57DAP | 8.99719 | 0.723 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 0.92314 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 76.6213 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 5.21861 | |
Mature Green Tomato/Ripe Tomato | 0.13158 | 0.018 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.11853 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.85553 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18897 | 0.877 |
1-1-2/M82 | 1.13289 | 1 |
12-2/M82 | 1.15042 | 1 |
12-4/M82 | 1.05512 | 1 |
1-3/M82 | 2.45618 | 0.479 |
2-1-1/M82 | 0.94478 | 0.465 |
2-1/M82 | 0.9224 | 1 |
2-6/M82 | 0.95633 | 1 |
3-2/M82 | 1.21853 | 0.549 |
4-1-1/M82 | 0.84214 | 1 |
4-1/M82 | 1.78768 | 1 |
4-3-2/M82 | 0.94398 | 1 |
4-3/M82 | 0.91859 | 1 |
5-3/M82 | 0.97129 | 1 |
6-2/M82 | 1.00183 | 1 |
6-3/M82 | 1.03898 | 1 |
7-1/M82 | 0.94821 | 0.509 |
7-2/M82 | 1.06981 | 1 |
9-3-2/M82 | 0.68357 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87327 | 1 |
IL2-6/WTpooled | 1.03061 | 1 |
IL7-5/WTpooled | 1.51382 | |
IL7-3/WTpooled | 0.98754 | 1 |
IL12-4/WTpooled | 0.87818 | 1 |
IL1-4/WTpooled | 0.83442 | 0.444 |
WT/WTpooled | 1.07298 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01677 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10684 | 0.846 |
DC3000/delta hrp 6h | 1.00216 | 0.95 |
DC3000/delta hrp 12h | 0.95412 | 1 |
DC3000/delta hrp 24h | 0.83577 | 0.126 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.64957 | 0.029 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78032 | 1 |
Exp 36h | 0.97073 | 1 |
Exp 60h | 0.60086 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.25028 | 0.936 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94876 | 0.282 |
transgenic ySAMdc/azygous control (breaker) | 0.93748 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.10842 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99673 | 0.832 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.45504 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86282 | 1 |
Manapal/WT (break) | 1.09722 | 1 |
Manapal/WT (red) | 0.85014 | 0.503 |
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