Expression of 1-1-1.2.7.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.126580.798
27DAP/17DAP1.087970.89
39DAP/27DAP1.023910.749
41DAP/39DAP1.121410.696
42DAP/41DAP1.328860.348
43DAP/42DAP0.938310.865
47DAP/43DAP0.901880.652
52DAP/47DAP1.347130.371
57DAP/52DAP0.83210.824

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.684360.054
17DAP/reference1.179730.033
27DAP/reference0.99150.694
39DAP/reference1.048220.816
41DAP/reference0.964830.542
42DAP/reference0.887470.052
43DAP/reference1.062710.899
47DAP/reference0.99790.636
52DAP/reference0.946010.341
57DAP/reference0.959150.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.115120.464
27DAP/17DAP0.995410.969
39DAP/27DAP1.029610.845
41DAP/39DAP1.082140.887
42DAP/41DAP1.257121
43DAP/42DAP0.984560.875
47DAP/43DAP0.966520.861
52DAP/47DAP1.125790.619
57DAP/52DAP0.948650.587
57DAP/7DAP1.331451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.803010.088
17DAP/reference0.837850.108
27DAP/reference0.917230.071
39DAP/reference0.737760.015
41DAP/reference0.774850.04
42DAP/reference0.814340.095
43DAP/reference0.553440.011
47DAP/reference0.846350.168
52DAP/reference0.807530.033
57DAP/reference0.731360.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952440.532
17DAP/reference0.896150.245
27DAP/reference0.857740.167
39DAP/reference1.085090.912
41DAP/reference1.124030.491
42DAP/reference0.758050.016
43DAP/reference1.059590.846
47DAP/reference0.82920.035
52DAP/reference0.863420.086
57DAP/reference1.016061

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.857430.135
17DAP/reference0.887910.243
27DAP/reference1.161520.934
39DAP/reference0.798640.021
41DAP/reference0.859760.185
42DAP/reference0.704270.019
43DAP/reference0.805440.084
47DAP/reference0.893170.139
52DAP/reference0.662980.089
57DAP/reference0.829970.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.125820.966
26DAP/20DAP1.037761
34DAP/26DAP1.343821
51DAP/34DAP0.965910.816
52DAP/51DAP1.193480.676
53DAP/52DAP1.082690.688
55DAP/53DAP1.126470.28
57DAP/55DAP1.60480.666
62DAP/57DAP0.662620.871
68DAP/62DAP0.922630.406
68DAP/14DAP1.197550.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.231611

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.193820.881
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.39371
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.91027
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.23886
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.13866

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.073791
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.061191
IL12-4/WTpooled1.27690.52
IL1-4/WTpooled0.801210.562
WT/WTpooled1.153031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.85660.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.098121
DC3000/delta hrp 6h0.651770.95
DC3000/delta hrp 12h0.884721
DC3000/delta hrp 24h0.868280.186

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.746680.317

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.993521
Exp 36h1.870061
Exp 60h1.112721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.959031
Var 0h0.319751
Var 12h I row2-row11.018410.795
Var 12h NI row2-row10.862880.546
Var 36h I row2-row10.834590.805
Var 36h NI row2-row11.006951
Var 60h I row2-row12.095650.562
Var 60h NI row2-row11.072011
Time course 0hI-0hNI1.124960.833
Time course 12hI-12hNI1.056350.687
Time course 36hI-36hNI0.962260.28
Time course 60hI-60hNI1.150040.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.991990.862
transgenic ySAMdc/azygous control (breaker)0.986141
transgenic ySAMdc/azygous control (red)0.931421

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.035940.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.638430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.912711
Manapal/WT (break)0.951951
Manapal/WT (red)N/AN/A