Expression of 1-1-1.2.7.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12658 | 0.798 |
27DAP/17DAP | 1.08797 | 0.89 |
39DAP/27DAP | 1.02391 | 0.749 |
41DAP/39DAP | 1.12141 | 0.696 |
42DAP/41DAP | 1.32886 | 0.348 |
43DAP/42DAP | 0.93831 | 0.865 |
47DAP/43DAP | 0.90188 | 0.652 |
52DAP/47DAP | 1.34713 | 0.371 |
57DAP/52DAP | 0.8321 | 0.824 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.68436 | 0.054 |
17DAP/reference | 1.17973 | 0.033 |
27DAP/reference | 0.9915 | 0.694 |
39DAP/reference | 1.04822 | 0.816 |
41DAP/reference | 0.96483 | 0.542 |
42DAP/reference | 0.88747 | 0.052 |
43DAP/reference | 1.06271 | 0.899 |
47DAP/reference | 0.9979 | 0.636 |
52DAP/reference | 0.94601 | 0.341 |
57DAP/reference | 0.95915 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11512 | 0.464 |
27DAP/17DAP | 0.99541 | 0.969 |
39DAP/27DAP | 1.02961 | 0.845 |
41DAP/39DAP | 1.08214 | 0.887 |
42DAP/41DAP | 1.25712 | 1 |
43DAP/42DAP | 0.98456 | 0.875 |
47DAP/43DAP | 0.96652 | 0.861 |
52DAP/47DAP | 1.12579 | 0.619 |
57DAP/52DAP | 0.94865 | 0.587 |
57DAP/7DAP | 1.33145 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80301 | 0.088 |
17DAP/reference | 0.83785 | 0.108 |
27DAP/reference | 0.91723 | 0.071 |
39DAP/reference | 0.73776 | 0.015 |
41DAP/reference | 0.77485 | 0.04 |
42DAP/reference | 0.81434 | 0.095 |
43DAP/reference | 0.55344 | 0.011 |
47DAP/reference | 0.84635 | 0.168 |
52DAP/reference | 0.80753 | 0.033 |
57DAP/reference | 0.73136 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95244 | 0.532 |
17DAP/reference | 0.89615 | 0.245 |
27DAP/reference | 0.85774 | 0.167 |
39DAP/reference | 1.08509 | 0.912 |
41DAP/reference | 1.12403 | 0.491 |
42DAP/reference | 0.75805 | 0.016 |
43DAP/reference | 1.05959 | 0.846 |
47DAP/reference | 0.8292 | 0.035 |
52DAP/reference | 0.86342 | 0.086 |
57DAP/reference | 1.01606 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85743 | 0.135 |
17DAP/reference | 0.88791 | 0.243 |
27DAP/reference | 1.16152 | 0.934 |
39DAP/reference | 0.79864 | 0.021 |
41DAP/reference | 0.85976 | 0.185 |
42DAP/reference | 0.70427 | 0.019 |
43DAP/reference | 0.80544 | 0.084 |
47DAP/reference | 0.89317 | 0.139 |
52DAP/reference | 0.66298 | 0.089 |
57DAP/reference | 0.82997 | 0.078 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12582 | 0.966 |
26DAP/20DAP | 1.03776 | 1 |
34DAP/26DAP | 1.34382 | 1 |
51DAP/34DAP | 0.96591 | 0.816 |
52DAP/51DAP | 1.19348 | 0.676 |
53DAP/52DAP | 1.08269 | 0.688 |
55DAP/53DAP | 1.12647 | 0.28 |
57DAP/55DAP | 1.6048 | 0.666 |
62DAP/57DAP | 0.66262 | 0.871 |
68DAP/62DAP | 0.92263 | 0.406 |
68DAP/14DAP | 1.19755 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.23161 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.19382 | 0.881 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.3937 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.91027 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.23886 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.13866 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.07379 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06119 | 1 |
IL12-4/WTpooled | 1.2769 | 0.52 |
IL1-4/WTpooled | 0.80121 | 0.562 |
WT/WTpooled | 1.15303 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8566 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09812 | 1 |
DC3000/delta hrp 6h | 0.65177 | 0.95 |
DC3000/delta hrp 12h | 0.88472 | 1 |
DC3000/delta hrp 24h | 0.86828 | 0.186 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.74668 | 0.317 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99352 | 1 |
Exp 36h | 1.87006 | 1 |
Exp 60h | 1.11272 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95903 | 1 |
Var 0h | 0.31975 | 1 |
Var 12h I row2-row1 | 1.01841 | 0.795 |
Var 12h NI row2-row1 | 0.86288 | 0.546 |
Var 36h I row2-row1 | 0.83459 | 0.805 |
Var 36h NI row2-row1 | 1.00695 | 1 |
Var 60h I row2-row1 | 2.09565 | 0.562 |
Var 60h NI row2-row1 | 1.07201 | 1 |
Time course 0hI-0hNI | 1.12496 | 0.833 |
Time course 12hI-12hNI | 1.05635 | 0.687 |
Time course 36hI-36hNI | 0.96226 | 0.28 |
Time course 60hI-60hNI | 1.15004 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99199 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.98614 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93142 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03594 | 0.125 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.63843 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91271 | 1 |
Manapal/WT (break) | 0.95195 | 1 |
Manapal/WT (red) | N/A | N/A |
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