Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.2.7.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98434	0.83
27DAP/17DAP	0.7889	0.622
39DAP/27DAP	1.39721	0.35
41DAP/39DAP	0.65264	0.381
42DAP/41DAP	2.58295	0.773
43DAP/42DAP	1.00555	0.937
47DAP/43DAP	0.75346	0.26
52DAP/47DAP	1.39621	0.572
57DAP/52DAP	1.58794	0.694

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	N/A	N/A
27DAP/reference	0.59751
39DAP/reference	1.18198
41DAP/reference	N/A	N/A
42DAP/reference	0.66901
43DAP/reference	0.46627
47DAP/reference	1.71074	0.885
52DAP/reference	0.84724
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9429	0.732
27DAP/17DAP	1.31955
39DAP/27DAP	0.30543
41DAP/39DAP	0.95635
42DAP/41DAP	1.18112	0.999
43DAP/42DAP	0.90721	0.729
47DAP/43DAP	2.27612	0.25
52DAP/47DAP	0.91387	0.902
57DAP/52DAP	2.10972
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.82137	0.08
17DAP/reference	0.84022	0.082
27DAP/reference	0.79307	0.011
39DAP/reference	0.76194	0.013
41DAP/reference	0.69629	0.012
42DAP/reference	0.69968	0.011
43DAP/reference	0.68644	0.016
47DAP/reference	0.70978	0.128
52DAP/reference	0.66647	0.012
57DAP/reference	0.7038	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.45615	0.38
17DAP/reference	0.76866	0.367
27DAP/reference	2.23441	0.648
39DAP/reference	1.26857	1
41DAP/reference	0.83245	0.047
42DAP/reference	N/A	N/A
43DAP/reference	1.00251	0.787
47DAP/reference	1.18365	0.712
52DAP/reference	0.64386	0.28
57DAP/reference	1.50189	0.009

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93117	0.391
17DAP/reference	1.02514	1
27DAP/reference	0.70566	0.03
39DAP/reference	0.86434	0.163
41DAP/reference	0.84895	0.107
42DAP/reference	0.67303	0.028
43DAP/reference	0.69736	0.04
47DAP/reference	1.3414	0.03
52DAP/reference	0.60416	0.069
57DAP/reference	2.54775

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.38571	0.966
26DAP/20DAP	1.18178
34DAP/26DAP	1.61078	1
51DAP/34DAP	0.63255
52DAP/51DAP	0.49184	0.045
53DAP/52DAP	0.77885	0.417
55DAP/53DAP	0.80062
57DAP/55DAP	1.54087	0.865
62DAP/57DAP	1.31887	0.723
68DAP/62DAP	1.73064
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.14736	0.105

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.37273	0.277
IL2-6/WTpooled	1.67973	0.419
IL7-5/WTpooled	0.77711	0.559
IL7-3/WTpooled	1.19442	1
IL12-4/WTpooled	1.48184	0.532
IL1-4/WTpooled	1.09983	1
WT/WTpooled	1.04749	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	0.08937

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.97009	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A