Expression of 1-1-1.2.7.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.591940.029
27DAP/17DAP0.990891
39DAP/27DAP1.032611
41DAP/39DAP0.962520.833
42DAP/41DAP1.024951
43DAP/42DAP1.042281
47DAP/43DAP0.898240.66
52DAP/47DAP1.566620.307
57DAP/52DAP1.055430.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.4010.012
17DAP/reference1.248340.229
27DAP/reference1.619340.013
39DAP/reference1.79880.027
41DAP/reference1.532340.032
42DAP/reference1.058710.2
43DAP/reference1.013910.982
47DAP/reference1.000660.674
52DAP/reference1.186240.217
57DAP/reference1.432330.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941990.428
27DAP/17DAP0.946790.684
39DAP/27DAP1.038120.677
41DAP/39DAP1.046060.763
42DAP/41DAP1.060530.773
43DAP/42DAP1.003361
47DAP/43DAP0.986820.939
52DAP/47DAP1.049560.831
57DAP/52DAP1.048080.825
57DAP/7DAP1.389590.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.258040.338
17DAP/reference1.404310.012
27DAP/reference1.403730.008
39DAP/reference1.069230.391
41DAP/reference1.028930.836
42DAP/reference1.562860.008
43DAP/reference1.307270.035
47DAP/reference0.97360.671
52DAP/reference1.427910.009
57DAP/reference1.517820.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.214910.384
17DAP/reference1.518350.008
27DAP/reference1.368540.042
39DAP/reference1.117210.489
41DAP/reference0.9880.531
42DAP/reference1.585280.007
43DAP/reference1.326050.065
47DAP/reference1.233940.043
52DAP/reference1.114810.208
57DAP/reference0.905880.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.361630.047
17DAP/reference1.70250.099
27DAP/reference1.692860.016
39DAP/reference1.947550.006
41DAP/reference1.685640.008
42DAP/reference1.767350.007
43DAP/reference1.496660.03
47DAP/reference1.156570.179
52DAP/reference1.372590.09
57DAP/reference1.68510.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.910011
26DAP/20DAP1.02961
34DAP/26DAP0.996881
51DAP/34DAP1.011150.893
52DAP/51DAP1.034880.792
53DAP/52DAP0.777610.049
55DAP/53DAP1.03240.938
57DAP/55DAP1.057230.805
62DAP/57DAP1.407370.622
68DAP/62DAP1.213330.747
68DAP/14DAP0.908041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.073740.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.070750.058
Mature Green Tomato/Ripe Tomato0.514850.038
Immature Eggplant/Mature Eggplant0.757670.134
Ripe Pepper/Ripe Tomato0.528360.293
Mature Eggplant/Ripe Tomato1.976721

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.119220.877
1-1-2/M821.201441
12-2/M821.042811
12-4/M820.9611
1-3/M821.21195
2-1-1/M820.75838
2-1/M820.89340.519
2-6/M821.014031
3-2/M821.171980.967
4-1-1/M821.075161
4-1/M821.026011
4-3-2/M820.89784
4-3/M821.667020.268
5-3/M821.112780.572
6-2/M821.18806
6-3/M821.025521
7-1/M820.82944
7-2/M821.337370.302
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.227530.277
IL2-6/WTpooled0.639240.348
IL7-5/WTpooled1.075540.67
IL7-3/WTpooled1.301130.362
IL12-4/WTpooled1.155930.646
IL1-4/WTpooled0.890840.699
WT/WTpooled0.977811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.377260.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961
DC3000/delta hrp 6h0.983670.95
DC3000/delta hrp 12h0.945451
DC3000/delta hrp 24h0.603040.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.654520.026
DC3000 delta B/DC3000 delta AB0.586370.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022821
Var 0h0.891961
Var 12h I row2-row10.886230.418
Var 12h NI row2-row10.917210.713
Var 36h I row2-row10.888050.202
Var 36h NI row2-row11.066521
Var 60h I row2-row11.082921
Var 60h NI row2-row10.988191
Time course 0hI-0hNI1.022070.799
Time course 12hI-12hNI1.014340.833
Time course 36hI-36hNI0.954210.306
Time course 60hI-60hNI0.59170.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.970390.324
transgenic ySAMdc/azygous control (breaker)1.181971
transgenic ySAMdc/azygous control (red)1.01911

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.014140.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.901920.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.229810.09
Manapal/WT (break)3.282780.13
Manapal/WT (red)1.542341