Expression of 1-1-1.2.7.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.59194 | 0.029 |
27DAP/17DAP | 0.99089 | 1 |
39DAP/27DAP | 1.03261 | 1 |
41DAP/39DAP | 0.96252 | 0.833 |
42DAP/41DAP | 1.02495 | 1 |
43DAP/42DAP | 1.04228 | 1 |
47DAP/43DAP | 0.89824 | 0.66 |
52DAP/47DAP | 1.56662 | 0.307 |
57DAP/52DAP | 1.05543 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.401 | 0.012 |
17DAP/reference | 1.24834 | 0.229 |
27DAP/reference | 1.61934 | 0.013 |
39DAP/reference | 1.7988 | 0.027 |
41DAP/reference | 1.53234 | 0.032 |
42DAP/reference | 1.05871 | 0.2 |
43DAP/reference | 1.01391 | 0.982 |
47DAP/reference | 1.00066 | 0.674 |
52DAP/reference | 1.18624 | 0.217 |
57DAP/reference | 1.43233 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94199 | 0.428 |
27DAP/17DAP | 0.94679 | 0.684 |
39DAP/27DAP | 1.03812 | 0.677 |
41DAP/39DAP | 1.04606 | 0.763 |
42DAP/41DAP | 1.06053 | 0.773 |
43DAP/42DAP | 1.00336 | 1 |
47DAP/43DAP | 0.98682 | 0.939 |
52DAP/47DAP | 1.04956 | 0.831 |
57DAP/52DAP | 1.04808 | 0.825 |
57DAP/7DAP | 1.38959 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25804 | 0.338 |
17DAP/reference | 1.40431 | 0.012 |
27DAP/reference | 1.40373 | 0.008 |
39DAP/reference | 1.06923 | 0.391 |
41DAP/reference | 1.02893 | 0.836 |
42DAP/reference | 1.56286 | 0.008 |
43DAP/reference | 1.30727 | 0.035 |
47DAP/reference | 0.9736 | 0.671 |
52DAP/reference | 1.42791 | 0.009 |
57DAP/reference | 1.51782 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21491 | 0.384 |
17DAP/reference | 1.51835 | 0.008 |
27DAP/reference | 1.36854 | 0.042 |
39DAP/reference | 1.11721 | 0.489 |
41DAP/reference | 0.988 | 0.531 |
42DAP/reference | 1.58528 | 0.007 |
43DAP/reference | 1.32605 | 0.065 |
47DAP/reference | 1.23394 | 0.043 |
52DAP/reference | 1.11481 | 0.208 |
57DAP/reference | 0.90588 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36163 | 0.047 |
17DAP/reference | 1.7025 | 0.099 |
27DAP/reference | 1.69286 | 0.016 |
39DAP/reference | 1.94755 | 0.006 |
41DAP/reference | 1.68564 | 0.008 |
42DAP/reference | 1.76735 | 0.007 |
43DAP/reference | 1.49666 | 0.03 |
47DAP/reference | 1.15657 | 0.179 |
52DAP/reference | 1.37259 | 0.09 |
57DAP/reference | 1.6851 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91001 | 1 |
26DAP/20DAP | 1.0296 | 1 |
34DAP/26DAP | 0.99688 | 1 |
51DAP/34DAP | 1.01115 | 0.893 |
52DAP/51DAP | 1.03488 | 0.792 |
53DAP/52DAP | 0.77761 | 0.049 |
55DAP/53DAP | 1.0324 | 0.938 |
57DAP/55DAP | 1.05723 | 0.805 |
62DAP/57DAP | 1.40737 | 0.622 |
68DAP/62DAP | 1.21333 | 0.747 |
68DAP/14DAP | 0.90804 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07374 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.07075 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.51485 | 0.038 |
Immature Eggplant/Mature Eggplant | 0.75767 | 0.134 |
Ripe Pepper/Ripe Tomato | 0.52836 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.97672 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11922 | 0.877 |
1-1-2/M82 | 1.20144 | 1 |
12-2/M82 | 1.04281 | 1 |
12-4/M82 | 0.961 | 1 |
1-3/M82 | 1.21195 | |
2-1-1/M82 | 0.75838 | |
2-1/M82 | 0.8934 | 0.519 |
2-6/M82 | 1.01403 | 1 |
3-2/M82 | 1.17198 | 0.967 |
4-1-1/M82 | 1.07516 | 1 |
4-1/M82 | 1.02601 | 1 |
4-3-2/M82 | 0.89784 | |
4-3/M82 | 1.66702 | 0.268 |
5-3/M82 | 1.11278 | 0.572 |
6-2/M82 | 1.18806 | |
6-3/M82 | 1.02552 | 1 |
7-1/M82 | 0.82944 | |
7-2/M82 | 1.33737 | 0.302 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.22753 | 0.277 |
IL2-6/WTpooled | 0.63924 | 0.348 |
IL7-5/WTpooled | 1.07554 | 0.67 |
IL7-3/WTpooled | 1.30113 | 0.362 |
IL12-4/WTpooled | 1.15593 | 0.646 |
IL1-4/WTpooled | 0.89084 | 0.699 |
WT/WTpooled | 0.97781 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.37726 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96 | 1 |
DC3000/delta hrp 6h | 0.98367 | 0.95 |
DC3000/delta hrp 12h | 0.94545 | 1 |
DC3000/delta hrp 24h | 0.60304 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65452 | 0.026 |
DC3000 delta B/DC3000 delta AB | 0.58637 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02282 | 1 |
Var 0h | 0.89196 | 1 |
Var 12h I row2-row1 | 0.88623 | 0.418 |
Var 12h NI row2-row1 | 0.91721 | 0.713 |
Var 36h I row2-row1 | 0.88805 | 0.202 |
Var 36h NI row2-row1 | 1.06652 | 1 |
Var 60h I row2-row1 | 1.08292 | 1 |
Var 60h NI row2-row1 | 0.98819 | 1 |
Time course 0hI-0hNI | 1.02207 | 0.799 |
Time course 12hI-12hNI | 1.01434 | 0.833 |
Time course 36hI-36hNI | 0.95421 | 0.306 |
Time course 60hI-60hNI | 0.5917 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97039 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.18197 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0191 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01414 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90192 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.22981 | 0.09 |
Manapal/WT (break) | 3.28278 | 0.13 |
Manapal/WT (red) | 1.54234 | 1 |
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