Expression of 1-1-1.2.8.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.840980.347
27DAP/17DAP1.018830.945
39DAP/27DAP1.428370.192
41DAP/39DAP0.881370.516
42DAP/41DAP1.061630.994
43DAP/42DAP0.972570.912
47DAP/43DAP0.865420.568
52DAP/47DAP0.976130.842
57DAP/52DAP1.393710.565

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.454020.016
17DAP/reference1.50160.039
27DAP/reference1.22460.038
39DAP/reference1.036440.842
41DAP/reference1.472390.014
42DAP/reference1.219590.006
43DAP/reference1.147660.403
47DAP/reference1.204330.448
52DAP/reference0.972560.489
57DAP/reference1.017211

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060160.508
27DAP/17DAP0.967470.878
39DAP/27DAP1.113490.253
41DAP/39DAP1.143850.735
42DAP/41DAP1.321820.46
43DAP/42DAP0.906530.399
47DAP/43DAP1.092690.758
52DAP/47DAP0.939670.839
57DAP/52DAP0.883870.457
57DAP/7DAP0.553340.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.745840.028
17DAP/reference1.533750.009
27DAP/reference1.305710.026
39DAP/reference1.189120.186
41DAP/reference1.265770.028
42DAP/reference1.18160.03
43DAP/reference1.218520.256
47DAP/reference1.252160.065
52DAP/reference1.30930.055
57DAP/reference1.291840.053

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197990.249
17DAP/reference1.107350.32
27DAP/reference1.250930.087
39DAP/reference1.134030.22
41DAP/reference1.275220.086
42DAP/reference1.128970.24
43DAP/reference1.320620.092
47DAP/reference1.187720.036
52DAP/reference1.289770.01
57DAP/reference1.533190.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.581050.017
17DAP/reference1.050470.727
27DAP/reference1.222680.171
39DAP/reference1.246870.048
41DAP/reference0.9850.682
42DAP/reference1.384260.171
43DAP/reference1.018711
47DAP/reference1.19470.388
52DAP/reference1.241150.363
57DAP/reference1.134160.339

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.84827
26DAP/20DAP1.273990.464
34DAP/26DAP0.978120.945
51DAP/34DAP0.902020.649
52DAP/51DAP0.706931
53DAP/52DAP0.87425
55DAP/53DAP1.170530.782
57DAP/55DAP1.488030.393
62DAP/57DAP1.233130.723
68DAP/62DAP0.760310.429
68DAP/14DAP0.793561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.615790.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.522910.05
Mature Green Tomato/Ripe Tomato1.171340.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.00648
Mature Eggplant/Ripe Tomato1.419230.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.929930.613
1-1-2/M821.129881
12-2/M820.977560.955
12-4/M821.197911
1-3/M821.28153
2-1-1/M820.934641
2-1/M820.853621
2-6/M821.055131
3-2/M820.8645
4-1-1/M820.91830.847
4-1/M821.652280.853
4-3-2/M821.194330.508
4-3/M821.092941
5-3/M821.164540.467
6-2/M820.93394
6-3/M820.928341
7-1/M820.87502
7-2/M821.143730.385
9-3-2/M821.188141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.110640.493
IL2-6/WTpooled1.096990.788
IL7-5/WTpooled0.84711
IL7-3/WTpooled1.06244
IL12-4/WTpooled0.984711
IL1-4/WTpooled0.96271
WT/WTpooled1.190361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.273630.154

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.051290.875
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.075811
DC3000/delta hrp 24h1.080590.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.317790.042
DC3000 delta B/DC3000 delta AB1.060931

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.270471
Exp 36h1.448650.693
Exp 60h1.554460.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002511
Var 0h0.997121
Var 12h I row2-row11.107120.692
Var 12h NI row2-row11.090430.649
Var 36h I row2-row11.169010.489
Var 36h NI row2-row11.266881
Var 60h I row2-row10.871670.285
Var 60h NI row2-row10.986111
Time course 0hI-0hNI0.854130.142
Time course 12hI-12hNI0.993841
Time course 36hI-36hNI1.249280.015
Time course 60hI-60hNI1.120020.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.173040.862
transgenic ySAMdc/azygous control (breaker)0.594160.134
transgenic ySAMdc/azygous control (red)0.875441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034170.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.649130.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.103661
Manapal/WT (break)0.972691
Manapal/WT (red)1.000031