Expression of 1-1-1.2.8.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7342 | 0.272 |
27DAP/17DAP | 1.22313 | 0.873 |
39DAP/27DAP | 1.02787 | 1 |
41DAP/39DAP | 0.79759 | 0.276 |
42DAP/41DAP | 0.83437 | 0.774 |
43DAP/42DAP | 1.11725 | 1 |
47DAP/43DAP | 0.86467 | 0.568 |
52DAP/47DAP | 1.13872 | 0.754 |
57DAP/52DAP | 1.02374 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1854 | 0.366 |
17DAP/reference | 0.96968 | 0.597 |
27DAP/reference | 1.11505 | 0.306 |
39DAP/reference | 1.07172 | 0.413 |
41DAP/reference | 1.01215 | 1 |
42DAP/reference | 0.96355 | 0.287 |
43DAP/reference | 0.91243 | 0.191 |
47DAP/reference | 0.87113 | 0.025 |
52DAP/reference | 1.00589 | 0.73 |
57DAP/reference | 1.04235 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97305 | 0.732 |
27DAP/17DAP | 1.48519 | 0.573 |
39DAP/27DAP | 1.08701 | 0.565 |
41DAP/39DAP | 0.94525 | 0.875 |
42DAP/41DAP | 1.17102 | 0.273 |
43DAP/42DAP | 1.00806 | 1 |
47DAP/43DAP | 0.99258 | 0.971 |
52DAP/47DAP | 1.1454 | 0.681 |
57DAP/52DAP | 1.07747 | 0.703 |
57DAP/7DAP | 1.6854 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69237 | 0.025 |
17DAP/reference | 2.15007 | 0.007 |
27DAP/reference | 1.64516 | 0.008 |
39DAP/reference | 1.80323 | 0.007 |
41DAP/reference | 1.68732 | 0.013 |
42DAP/reference | 1.88434 | 0.006 |
43DAP/reference | 2.16853 | 0.007 |
47DAP/reference | 1.48091 | 0.224 |
52DAP/reference | 1.6938 | 0.007 |
57DAP/reference | 1.98277 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33472 | 0.234 |
17DAP/reference | 1.16966 | 0.176 |
27DAP/reference | 1.40783 | 0.028 |
39DAP/reference | 1.15607 | 0.366 |
41DAP/reference | 1.07316 | 0.502 |
42DAP/reference | 1.04372 | 1 |
43DAP/reference | 0.93284 | 0.438 |
47DAP/reference | 1.08753 | 0.556 |
52DAP/reference | 1.26536 | 0.006 |
57DAP/reference | 1.1607 | 0.214 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.65466 | 0.033 |
17DAP/reference | 1.31564 | 0.518 |
27DAP/reference | 2.19845 | 0.028 |
39DAP/reference | 1.98096 | 0.006 |
41DAP/reference | 2.1777 | 0.01 |
42DAP/reference | 1.79074 | 0.037 |
43DAP/reference | 1.82904 | 0.022 |
47DAP/reference | 1.05076 | 1 |
52DAP/reference | 1.99482 | 0.112 |
57DAP/reference | 1.24485 | 0.153 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97291 | 1 |
26DAP/20DAP | 1.10774 | 0.953 |
34DAP/26DAP | 1.0388 | 1 |
51DAP/34DAP | 1.6384 | 0.087 |
52DAP/51DAP | 0.84531 | 1 |
53DAP/52DAP | 2.08648 | 0.047 |
55DAP/53DAP | 0.88401 | 0.709 |
57DAP/55DAP | 0.92696 | 0.694 |
62DAP/57DAP | 1.08502 | 0.935 |
68DAP/62DAP | 1.50978 | 0.142 |
68DAP/14DAP | 1.40176 | 0.094 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05548 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.46288 | 0.577 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.99649 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.93977 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.92692 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02669 | 1 |
IL2-6/WTpooled | 1.19325 | 0.584 |
IL7-5/WTpooled | 1.57149 | |
IL7-3/WTpooled | 0.89528 | 1 |
IL12-4/WTpooled | 0.79226 | 0.581 |
IL1-4/WTpooled | 1.15705 | 0.426 |
WT/WTpooled | 0.9502 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94778 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03552 | 0.921 |
DC3000/delta hrp 6h | 1.09669 | 1 |
DC3000/delta hrp 12h | 0.74884 | 1 |
DC3000/delta hrp 24h | 0.66291 | 0.049 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02183 | 1 |
DC3000 delta B/DC3000 delta AB | 1.01386 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09004 | 1 |
Exp 36h | 0.56873 | 0.393 |
Exp 60h | 0.59695 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0698 | 1 |
Var 0h | 0.84147 | 0.933 |
Var 12h I row2-row1 | 1.01546 | 1 |
Var 12h NI row2-row1 | 1.00855 | 1 |
Var 36h I row2-row1 | 1.121 | 0.309 |
Var 36h NI row2-row1 | 1.02596 | 1 |
Var 60h I row2-row1 | 0.5241 | 0.293 |
Var 60h NI row2-row1 | 1.04341 | 1 |
Time course 0hI-0hNI | 0.9925 | 1 |
Time course 12hI-12hNI | 1.02629 | 0.818 |
Time course 36hI-36hNI | 1.03815 | 0.722 |
Time course 60hI-60hNI | 1.33104 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04268 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.64668 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.87438 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96574 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88338 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.50037 | 1 |
Manapal/WT (break) | 2.73413 | 0.13 |
Manapal/WT (red) | 1.97191 | 0.222 |
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