Expression of 1-1-1.2.8.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.997360.867
27DAP/17DAP1.003070.994
39DAP/27DAP0.899040.583
41DAP/39DAP1.259250.575
42DAP/41DAP1.086940.899
43DAP/42DAP1.068690.991
47DAP/43DAP0.774430.321
52DAP/47DAP0.795970.498
57DAP/52DAP0.899050.8

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.884020.154
17DAP/reference0.976120.664
27DAP/reference1.054530.487
39DAP/reference1.234310.093
41DAP/reference1.107330.145
42DAP/reference0.970110.315
43DAP/reference1.09950.152
47DAP/reference0.987840.503
52DAP/reference0.905340.21
57DAP/reference1.001050.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.533830.093
27DAP/17DAP1.010531
39DAP/27DAP0.958490.821
41DAP/39DAP0.936040.793
42DAP/41DAP1.084830.615
43DAP/42DAP1.098830.413
47DAP/43DAP0.955760.75
52DAP/47DAP1.228130.484
57DAP/52DAP1.067240.899
57DAP/7DAP1.015721

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.132291
17DAP/reference1.19637
27DAP/reference0.90692
39DAP/reference1.62850.314
41DAP/reference1.121510.491
42DAP/reference1.357680.174
43DAP/reference1.134191
47DAP/reference1.144750.298
52DAP/reference0.947490.435
57DAP/reference1.456320.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.346370.042
17DAP/reference1.315540.02
27DAP/reference1.334390.018
39DAP/reference1.183550.109
41DAP/reference1.042821
42DAP/reference1.4070.008
43DAP/reference2.157640.114
47DAP/reference1.249090.041
52DAP/reference1.284820.043
57DAP/reference1.500650.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121250.775
17DAP/reference1.104380.163
27DAP/reference0.97859
39DAP/reference1.5180.097
41DAP/reference0.64741
42DAP/reference0.936130.816
43DAP/reference1.189930.439
47DAP/reference1.160670.163
52DAP/reference1.117840.759
57DAP/reference1.167810.255

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.003641
26DAP/20DAP1.348890.574
34DAP/26DAP0.8420.735
51DAP/34DAP1.451770.159
52DAP/51DAP1.219130.42
53DAP/52DAP0.780620.342
55DAP/53DAP0.896460.648
57DAP/55DAP0.859730.415
62DAP/57DAP6.332960.868
68DAP/62DAP0.695470.378
68DAP/14DAP3.695440.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.498450.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.046630.666
Mature Green Tomato/Ripe Tomato0.860660.446
Immature Eggplant/Mature Eggplant1.275710.136
Ripe Pepper/Ripe Tomato1.389610.258
Mature Eggplant/Ripe Tomato1.286970.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971320.961
1-1-2/M821.024161
12-2/M820.936430.955
12-4/M820.88503
1-3/M821.01521
2-1-1/M821.1141
2-1/M821.082761
2-6/M821.068150.695
3-2/M821.05131
4-1-1/M82N/AN/A
4-1/M821.16956
4-3-2/M821.06744
4-3/M820.936070.611
5-3/M820.966610.395
6-2/M821.03873
6-3/M820.973531
7-1/M820.97285
7-2/M821.111020.291
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.889750.243
IL2-6/WTpooled1.307430.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.988711
IL12-4/WTpooled1.093410.737
IL1-4/WTpooled1.202090.426
WT/WTpooled1.053850.785

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.809560.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032280.921
DC3000/delta hrp 6h1.110991
DC3000/delta hrp 12h1.030291
DC3000/delta hrp 24h1.083740.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.61265
DC3000 delta B/DC3000 delta AB1.082951

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.242681
Exp 60h1.098780.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.038531
Var 0h1.095170.98
Var 12h I row2-row10.967060.856
Var 12h NI row2-row11.249321
Var 36h I row2-row11.044521
Var 36h NI row2-row11.195321
Var 60h I row2-row10.997141
Var 60h NI row2-row11.027281
Time course 0hI-0hNI0.914610.522
Time course 12hI-12hNI0.898370.154
Time course 36hI-36hNI0.781460.041
Time course 60hI-60hNI0.448570.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.000021
transgenic ySAMdc/azygous control (breaker)0.870690.49
transgenic ySAMdc/azygous control (red)0.956171

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027190.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.347850.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.898971
Manapal/WT (break)1.048271
Manapal/WT (red)0.936620.607