Expression of 1-1-1.3.1.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40172 | 0.561 |
27DAP/17DAP | 0.90296 | 0.766 |
39DAP/27DAP | 1.31166 | 0.244 |
41DAP/39DAP | 0.85631 | 0.447 |
42DAP/41DAP | 0.99348 | 1 |
43DAP/42DAP | 1.70884 | 0.491 |
47DAP/43DAP | 1.24553 | 0.261 |
52DAP/47DAP | 0.63359 | 0.211 |
57DAP/52DAP | 1.08228 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15173 | 0.049 |
17DAP/reference | 1.03338 | 0.585 |
27DAP/reference | 1.02592 | 0.782 |
39DAP/reference | 0.9685 | 0.575 |
41DAP/reference | 0.96233 | 0.542 |
42DAP/reference | 1.14155 | 0.021 |
43DAP/reference | 1.15043 | 0.012 |
47DAP/reference | 1.4821 | 0.001 |
52DAP/reference | 1.13345 | 0.062 |
57DAP/reference | 1.02928 | 0.682 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38278 | 0.039 |
27DAP/17DAP | 0.94392 | 0.821 |
39DAP/27DAP | 0.77466 | 0.141 |
41DAP/39DAP | 1.30002 | 0.801 |
42DAP/41DAP | 0.89177 | 0.309 |
43DAP/42DAP | 1.13442 | 0.072 |
47DAP/43DAP | 1.03462 | 0.956 |
52DAP/47DAP | 1.05057 | 0.851 |
57DAP/52DAP | 1.02843 | 1 |
57DAP/7DAP | 1.33515 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.84128 | 0.024 |
17DAP/reference | 1.77202 | 0.009 |
27DAP/reference | 1.20572 | 0.088 |
39DAP/reference | 1.64705 | 0.007 |
41DAP/reference | 1.20434 | 0.314 |
42DAP/reference | 1.65971 | 0.014 |
43DAP/reference | 2.29385 | 0.006 |
47DAP/reference | 2.22266 | 0.019 |
52DAP/reference | 1.55901 | 0.011 |
57DAP/reference | 1.85517 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00689 | 0.97 |
17DAP/reference | 1.42219 | 0.014 |
27DAP/reference | 1.06702 | 0.692 |
39DAP/reference | 1.18277 | 0.023 |
41DAP/reference | 1.01107 | 1 |
42DAP/reference | 0.99676 | 0.655 |
43DAP/reference | 0.81374 | 0.111 |
47DAP/reference | 0.94782 | 0.208 |
52DAP/reference | 1.02009 | 0.988 |
57DAP/reference | 0.85413 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44114 | 0.023 |
17DAP/reference | 1.31944 | 0.091 |
27DAP/reference | 1.27364 | 0.041 |
39DAP/reference | 1.2754 | 0.025 |
41DAP/reference | 1.07792 | 0.734 |
42DAP/reference | 1.48416 | 0.014 |
43DAP/reference | 1.66891 | 0.009 |
47DAP/reference | 1.7189 | 0.008 |
52DAP/reference | 1.64085 | 0.034 |
57DAP/reference | 1.40117 | 0.034 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93939 | 1 |
26DAP/20DAP | 1.66535 | 0.195 |
34DAP/26DAP | 1.0685 | 1 |
51DAP/34DAP | 1.21385 | 0.387 |
52DAP/51DAP | 0.60331 | 1 |
53DAP/52DAP | 1.40214 | 0.097 |
55DAP/53DAP | 0.76188 | 0.044 |
57DAP/55DAP | 1.32522 | 0.682 |
62DAP/57DAP | 0.82359 | 0.05 |
68DAP/62DAP | 1.07102 | 1 |
68DAP/14DAP | 1.12516 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.41302 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96537 | 0.658 |
Mature Green Tomato/Ripe Tomato | 1.29378 | 0.044 |
Immature Eggplant/Mature Eggplant | 0.70366 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.71568 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.69268 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.32719 | 0.536 |
1-1-2/M82 | 1.16826 | 1 |
12-2/M82 | 0.84974 | 0.955 |
12-4/M82 | 1.27248 | 1 |
1-3/M82 | 1.90419 | 0.479 |
2-1-1/M82 | 0.88495 | |
2-1/M82 | 0.65243 | 0.322 |
2-6/M82 | 1.41859 | 0.452 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.40266 | 1 |
4-1/M82 | 0.82547 | |
4-3-2/M82 | 2.00243 | 0.246 |
4-3/M82 | 1.80232 | 0.268 |
5-3/M82 | 0.85319 | 1 |
6-2/M82 | 1.73032 | 0.219 |
6-3/M82 | 0.99396 | 1 |
7-1/M82 | 0.96766 | 0.509 |
7-2/M82 | 1.63382 | 0.318 |
9-3-2/M82 | 1.9725 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.27196 | 1 |
IL7-5/WTpooled | 1.18591 | |
IL7-3/WTpooled | 0.98357 | 1 |
IL12-4/WTpooled | 0.6796 | 0.554 |
IL1-4/WTpooled | 1.36613 | 1 |
WT/WTpooled | 1.00199 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.81193 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97089 | 1 |
DC3000/delta hrp 6h | 0.9676 | 0.95 |
DC3000/delta hrp 12h | 1.03303 | 1 |
DC3000/delta hrp 24h | 1.15616 | 0.271 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15098 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.12523 | 0.457 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99822 | 1 |
Exp 36h | 1.07133 | 1 |
Exp 60h | 1.03549 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.99576 | 1 |
Var 12h I row2-row1 | 0.92761 | 0.948 |
Var 12h NI row2-row1 | 1.30284 | 0.281 |
Var 36h I row2-row1 | 2.32174 | 0.601 |
Var 36h NI row2-row1 | 0.92645 | 0.743 |
Var 60h I row2-row1 | 0.76577 | 0.582 |
Var 60h NI row2-row1 | 0.82736 | 0.359 |
Time course 0hI-0hNI | 1.07222 | 0.662 |
Time course 12hI-12hNI | 0.91886 | 0.746 |
Time course 36hI-36hNI | 1.25762 | 0.28 |
Time course 60hI-60hNI | 2.9069 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90627 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.02328 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21982 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.35751 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80066 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94656 | 1 |
Manapal/WT (break) | 1.1698 | 0.381 |
Manapal/WT (red) | 0.85037 | 0.199 |
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