Expression of 1-1-1.3.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.401720.561
27DAP/17DAP0.902960.766
39DAP/27DAP1.311660.244
41DAP/39DAP0.856310.447
42DAP/41DAP0.993481
43DAP/42DAP1.708840.491
47DAP/43DAP1.245530.261
52DAP/47DAP0.633590.211
57DAP/52DAP1.082280.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.151730.049
17DAP/reference1.033380.585
27DAP/reference1.025920.782
39DAP/reference0.96850.575
41DAP/reference0.962330.542
42DAP/reference1.141550.021
43DAP/reference1.150430.012
47DAP/reference1.48210.001
52DAP/reference1.133450.062
57DAP/reference1.029280.682

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.382780.039
27DAP/17DAP0.943920.821
39DAP/27DAP0.774660.141
41DAP/39DAP1.300020.801
42DAP/41DAP0.891770.309
43DAP/42DAP1.134420.072
47DAP/43DAP1.034620.956
52DAP/47DAP1.050570.851
57DAP/52DAP1.028431
57DAP/7DAP1.335150.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.841280.024
17DAP/reference1.772020.009
27DAP/reference1.205720.088
39DAP/reference1.647050.007
41DAP/reference1.204340.314
42DAP/reference1.659710.014
43DAP/reference2.293850.006
47DAP/reference2.222660.019
52DAP/reference1.559010.011
57DAP/reference1.855170.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006890.97
17DAP/reference1.422190.014
27DAP/reference1.067020.692
39DAP/reference1.182770.023
41DAP/reference1.011071
42DAP/reference0.996760.655
43DAP/reference0.813740.111
47DAP/reference0.947820.208
52DAP/reference1.020090.988
57DAP/reference0.854130.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.441140.023
17DAP/reference1.319440.091
27DAP/reference1.273640.041
39DAP/reference1.27540.025
41DAP/reference1.077920.734
42DAP/reference1.484160.014
43DAP/reference1.668910.009
47DAP/reference1.71890.008
52DAP/reference1.640850.034
57DAP/reference1.401170.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.939391
26DAP/20DAP1.665350.195
34DAP/26DAP1.06851
51DAP/34DAP1.213850.387
52DAP/51DAP0.603311
53DAP/52DAP1.402140.097
55DAP/53DAP0.761880.044
57DAP/55DAP1.325220.682
62DAP/57DAP0.823590.05
68DAP/62DAP1.071021
68DAP/14DAP1.125160.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.413020.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.965370.658
Mature Green Tomato/Ripe Tomato1.293780.044
Immature Eggplant/Mature Eggplant0.703660.062
Ripe Pepper/Ripe Tomato0.715680.293
Mature Eggplant/Ripe Tomato0.692681

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.327190.536
1-1-2/M821.168261
12-2/M820.849740.955
12-4/M821.272481
1-3/M821.904190.479
2-1-1/M820.88495
2-1/M820.652430.322
2-6/M821.418590.452
3-2/M82N/AN/A
4-1-1/M821.402661
4-1/M820.82547
4-3-2/M822.002430.246
4-3/M821.802320.268
5-3/M820.853191
6-2/M821.730320.219
6-3/M820.993961
7-1/M820.967660.509
7-2/M821.633820.318
9-3-2/M821.97250.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.271961
IL7-5/WTpooled1.18591
IL7-3/WTpooled0.983571
IL12-4/WTpooled0.67960.554
IL1-4/WTpooled1.366131
WT/WTpooled1.001991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.811930.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.970891
DC3000/delta hrp 6h0.96760.95
DC3000/delta hrp 12h1.033031
DC3000/delta hrp 24h1.156160.271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.150980.333
DC3000 delta B/DC3000 delta AB1.125230.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.998221
Exp 36h1.071331
Exp 60h1.035491

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.995761
Var 12h I row2-row10.927610.948
Var 12h NI row2-row11.302840.281
Var 36h I row2-row12.321740.601
Var 36h NI row2-row10.926450.743
Var 60h I row2-row10.765770.582
Var 60h NI row2-row10.827360.359
Time course 0hI-0hNI1.072220.662
Time course 12hI-12hNI0.918860.746
Time course 36hI-36hNI1.257620.28
Time course 60hI-60hNI2.90690.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.906270.428
transgenic ySAMdc/azygous control (breaker)1.023281
transgenic ySAMdc/azygous control (red)1.219820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.357510.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.800660.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.946561
Manapal/WT (break)1.16980.381
Manapal/WT (red)0.850370.199