Expression of 1-1-1.3.1.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.72706 | 1 |
27DAP/17DAP | 0.5669 | 0.101 |
39DAP/27DAP | 1.70421 | 0.691 |
41DAP/39DAP | 1.72028 | 0.223 |
42DAP/41DAP | 1.67364 | 0.325 |
43DAP/42DAP | 1.28787 | 0.948 |
47DAP/43DAP | 0.82666 | 0.473 |
52DAP/47DAP | 1.68347 | 0.657 |
57DAP/52DAP | 1.00993 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.71066 | 0.76 |
17DAP/reference | 1.02294 | |
27DAP/reference | 0.3464 | |
39DAP/reference | 1.2277 | 1 |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.064 | 1 |
43DAP/reference | 0.53727 | |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.51968 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10376 | |
27DAP/17DAP | 0.56343 | 0.724 |
39DAP/27DAP | 1.22378 | |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.34897 | 0.708 |
43DAP/42DAP | 0.53598 | 0.482 |
47DAP/43DAP | 2.10067 | |
52DAP/47DAP | 5.96349 | 0.084 |
57DAP/52DAP | 0.45714 | |
57DAP/7DAP | 0.56749 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89237 | 0.157 |
17DAP/reference | 1.29204 | 0.02 |
27DAP/reference | 1.03669 | 0.804 |
39DAP/reference | 1.16185 | 0.21 |
41DAP/reference | 0.88578 | 0.213 |
42DAP/reference | 0.8979 | 0.066 |
43DAP/reference | 0.91603 | 0.151 |
47DAP/reference | 0.74492 | 0.044 |
52DAP/reference | 0.78973 | 0.046 |
57DAP/reference | 0.86513 | 0.036 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81221 | 0.362 |
17DAP/reference | 0.77792 | 0.434 |
27DAP/reference | 1.20151 | 0.765 |
39DAP/reference | 1.70442 | 0.366 |
41DAP/reference | 1.52065 | |
42DAP/reference | 1.05202 | 1 |
43DAP/reference | 0.80009 | 0.314 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.77529 | 0.38 |
57DAP/reference | 1.9159 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05857 | 0.659 |
17DAP/reference | 1.05962 | 0.988 |
27DAP/reference | 0.84898 | 0.23 |
39DAP/reference | 1.15029 | 0.182 |
41DAP/reference | 0.97111 | 0.512 |
42DAP/reference | 0.86369 | 0.036 |
43DAP/reference | 0.85371 | 0.15 |
47DAP/reference | 1.34777 | 0.562 |
52DAP/reference | 0.87211 | 0.433 |
57DAP/reference | 0.95039 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.72827 | 0.966 |
26DAP/20DAP | 1.41015 | 0.549 |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.34655 | 0.065 |
52DAP/51DAP | 1.63219 | 0.077 |
53DAP/52DAP | 0.90136 | 0.772 |
55DAP/53DAP | 0.86213 | 0.336 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.58614 | |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98943 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1024 | |
IL2-6/WTpooled | 0.5843 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02478 | 1 |
IL12-4/WTpooled | 0.77585 | 0.71 |
IL1-4/WTpooled | 0.72072 | |
WT/WTpooled | 1.04635 | 0.89 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 4.81744 | |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.00384 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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