Expression of 1-1-1.3.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.727061
27DAP/17DAP0.56690.101
39DAP/27DAP1.704210.691
41DAP/39DAP1.720280.223
42DAP/41DAP1.673640.325
43DAP/42DAP1.287870.948
47DAP/43DAP0.826660.473
52DAP/47DAP1.683470.657
57DAP/52DAP1.009930.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.710660.76
17DAP/reference1.02294
27DAP/reference0.3464
39DAP/reference1.22771
41DAP/referenceN/AN/A
42DAP/reference1.0641
43DAP/reference0.53727
47DAP/referenceN/AN/A
52DAP/reference0.51968
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.10376
27DAP/17DAP0.563430.724
39DAP/27DAP1.22378
41DAP/39DAPN/AN/A
42DAP/41DAP1.348970.708
43DAP/42DAP0.535980.482
47DAP/43DAP2.10067
52DAP/47DAP5.963490.084
57DAP/52DAP0.45714
57DAP/7DAP0.567490.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892370.157
17DAP/reference1.292040.02
27DAP/reference1.036690.804
39DAP/reference1.161850.21
41DAP/reference0.885780.213
42DAP/reference0.89790.066
43DAP/reference0.916030.151
47DAP/reference0.744920.044
52DAP/reference0.789730.046
57DAP/reference0.865130.036

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.812210.362
17DAP/reference0.777920.434
27DAP/reference1.201510.765
39DAP/reference1.704420.366
41DAP/reference1.52065
42DAP/reference1.052021
43DAP/reference0.800090.314
47DAP/referenceN/AN/A
52DAP/reference0.775290.38
57DAP/reference1.9159

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058570.659
17DAP/reference1.059620.988
27DAP/reference0.848980.23
39DAP/reference1.150290.182
41DAP/reference0.971110.512
42DAP/reference0.863690.036
43DAP/reference0.853710.15
47DAP/reference1.347770.562
52DAP/reference0.872110.433
57DAP/reference0.95039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.728270.966
26DAP/20DAP1.410150.549
34DAP/26DAPN/AN/A
51DAP/34DAP0.346550.065
52DAP/51DAP1.632190.077
53DAP/52DAP0.901360.772
55DAP/53DAP0.862130.336
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAP0.58614
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.989430.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1024
IL2-6/WTpooled0.58430.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.024781
IL12-4/WTpooled0.775850.71
IL1-4/WTpooled0.72072
WT/WTpooled1.046350.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h4.81744
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.00384
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A