Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.3.1.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.72706	1
27DAP/17DAP	0.5669	0.101
39DAP/27DAP	1.70421	0.691
41DAP/39DAP	1.72028	0.223
42DAP/41DAP	1.67364	0.325
43DAP/42DAP	1.28787	0.948
47DAP/43DAP	0.82666	0.473
52DAP/47DAP	1.68347	0.657
57DAP/52DAP	1.00993	0.923

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.71066	0.76
17DAP/reference	1.02294
27DAP/reference	0.3464
39DAP/reference	1.2277	1
41DAP/reference	N/A	N/A
42DAP/reference	1.064	1
43DAP/reference	0.53727
47DAP/reference	N/A	N/A
52DAP/reference	0.51968
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.10376
27DAP/17DAP	0.56343	0.724
39DAP/27DAP	1.22378
41DAP/39DAP	N/A	N/A
42DAP/41DAP	1.34897	0.708
43DAP/42DAP	0.53598	0.482
47DAP/43DAP	2.10067
52DAP/47DAP	5.96349	0.084
57DAP/52DAP	0.45714
57DAP/7DAP	0.56749	0.219

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89237	0.157
17DAP/reference	1.29204	0.02
27DAP/reference	1.03669	0.804
39DAP/reference	1.16185	0.21
41DAP/reference	0.88578	0.213
42DAP/reference	0.8979	0.066
43DAP/reference	0.91603	0.151
47DAP/reference	0.74492	0.044
52DAP/reference	0.78973	0.046
57DAP/reference	0.86513	0.036

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81221	0.362
17DAP/reference	0.77792	0.434
27DAP/reference	1.20151	0.765
39DAP/reference	1.70442	0.366
41DAP/reference	1.52065
42DAP/reference	1.05202	1
43DAP/reference	0.80009	0.314
47DAP/reference	N/A	N/A
52DAP/reference	0.77529	0.38
57DAP/reference	1.9159

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05857	0.659
17DAP/reference	1.05962	0.988
27DAP/reference	0.84898	0.23
39DAP/reference	1.15029	0.182
41DAP/reference	0.97111	0.512
42DAP/reference	0.86369	0.036
43DAP/reference	0.85371	0.15
47DAP/reference	1.34777	0.562
52DAP/reference	0.87211	0.433
57DAP/reference	0.95039

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.72827	0.966
26DAP/20DAP	1.41015	0.549
34DAP/26DAP	N/A	N/A
51DAP/34DAP	0.34655	0.065
52DAP/51DAP	1.63219	0.077
53DAP/52DAP	0.90136	0.772
55DAP/53DAP	0.86213	0.336
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	0.58614
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.98943	0.814

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.1024
IL2-6/WTpooled	0.5843	0.383
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.02478	1
IL12-4/WTpooled	0.77585	0.71
IL1-4/WTpooled	0.72072
WT/WTpooled	1.04635	0.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	4.81744
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	1.00384
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A