Expression of 1-1-1.3.10.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060370.827
27DAP/17DAP1.099420.849
39DAP/27DAP0.872580.449
41DAP/39DAP1.000541
42DAP/41DAP0.948851
43DAP/42DAP1.028311
47DAP/43DAP1.130930.267
52DAP/47DAP0.910920.724
57DAP/52DAP1.015761

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.984290.589
17DAP/reference1.120260.017
27DAP/reference1.125880.012
39DAP/reference1.093710.108
41DAP/reference1.115310.05
42DAP/reference0.926650.009
43DAP/reference0.941140.429
47DAP/reference0.948210.05
52DAP/reference0.878680.128
57DAP/reference0.869560.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.997320.899
27DAP/17DAP0.977880.887
39DAP/27DAP0.966510.607
41DAP/39DAP0.970740.968
42DAP/41DAP0.921910.649
43DAP/42DAP1.105710.192
47DAP/43DAP0.874860.597
52DAP/47DAP1.034520.9
57DAP/52DAP0.95270.484
57DAP/7DAP0.979831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.673080.074
17DAP/reference0.975670.518
27DAP/reference1.040890.804
39DAP/reference1.274950.03
41DAP/reference1.818120.018
42DAP/reference1.24850.132
43DAP/reference1.330770.212
47DAP/reference0.996321
52DAP/reference1.114610.636
57DAP/reference0.765940.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938030.457
17DAP/reference1.181640.031
27DAP/reference1.068270.847
39DAP/reference1.23930.15
41DAP/reference1.186380.241
42DAP/reference1.160040.105
43DAP/reference0.913880.385
47DAP/reference0.946470.227
52DAP/reference1.408670.006
57DAP/reference1.12860.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.766250.05
17DAP/reference0.895390.358
27DAP/reference0.940520.27
39DAP/reference0.905090.111
41DAP/reference0.960720.512
42DAP/reference0.899150.287
43DAP/reference0.961770.523
47DAP/reference0.860480.06
52DAP/reference1.005670.838
57DAP/reference0.607760.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.968721
26DAP/20DAP0.926270.512
34DAP/26DAP1.076761
51DAP/34DAP1.0020.883
52DAP/51DAP1.075560.676
53DAP/52DAP1.092540.296
55DAP/53DAP1.016980.964
57DAP/55DAP0.986320.925
62DAP/57DAP1.001361
68DAP/62DAP1.015030.914
68DAP/14DAP0.885181

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.463720.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper8.64702
Mature Green Tomato/Ripe Tomato2.118960.02
Immature Eggplant/Mature Eggplant0.666950.062
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato3.5411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.141710.574
1-1-2/M820.856240.958
12-2/M820.95194
12-4/M821.254631
1-3/M820.854080.378
2-1-1/M820.974841
2-1/M82N/AN/A
2-6/M821.087610.594
3-2/M821.00405
4-1-1/M820.74452
4-1/M821.168120.853
4-3-2/M821.021961
4-3/M82N/AN/A
5-3/M820.96651
6-2/M820.603311
6-3/M821.077591
7-1/M82N/AN/A
7-2/M820.812860.578
9-3-2/M820.817440.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.076310.277
IL2-6/WTpooled1.05751
IL7-5/WTpooled0.72385
IL7-3/WTpooled0.976641
IL12-4/WTpooled0.858251
IL1-4/WTpooled1.017761
WT/WTpooled1.057190.774

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.097170.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.020340.921
DC3000/delta hrp 6h1.090771
DC3000/delta hrp 12h1.010951
DC3000/delta hrp 24h4.324210.045

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.256510.145
DC3000 delta B/DC3000 delta AB1.086510.443

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.67950.328
Exp 36h1.084971
Exp 60h0.4940.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013991
Var 0h1.226160.325
Var 12h I row2-row10.988771
Var 12h NI row2-row11.047111
Var 36h I row2-row11.120350.908
Var 36h NI row2-row10.803181
Var 60h I row2-row10.910050.439
Var 60h NI row2-row11.001541
Time course 0hI-0hNI1.002741
Time course 12hI-12hNI0.957070.562
Time course 36hI-36hNI1.147070.101
Time course 60hI-60hNI1.005321

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.079320.699
transgenic ySAMdc/azygous control (breaker)0.779290.49
transgenic ySAMdc/azygous control (red)1.767110.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980770.22

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.879930.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.194120.307
Manapal/WT (break)0.664041
Manapal/WT (red)1.453690.164