Expression of 1-1-1.3.10.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06037 | 0.827 |
27DAP/17DAP | 1.09942 | 0.849 |
39DAP/27DAP | 0.87258 | 0.449 |
41DAP/39DAP | 1.00054 | 1 |
42DAP/41DAP | 0.94885 | 1 |
43DAP/42DAP | 1.02831 | 1 |
47DAP/43DAP | 1.13093 | 0.267 |
52DAP/47DAP | 0.91092 | 0.724 |
57DAP/52DAP | 1.01576 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98429 | 0.589 |
17DAP/reference | 1.12026 | 0.017 |
27DAP/reference | 1.12588 | 0.012 |
39DAP/reference | 1.09371 | 0.108 |
41DAP/reference | 1.11531 | 0.05 |
42DAP/reference | 0.92665 | 0.009 |
43DAP/reference | 0.94114 | 0.429 |
47DAP/reference | 0.94821 | 0.05 |
52DAP/reference | 0.87868 | 0.128 |
57DAP/reference | 0.86956 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99732 | 0.899 |
27DAP/17DAP | 0.97788 | 0.887 |
39DAP/27DAP | 0.96651 | 0.607 |
41DAP/39DAP | 0.97074 | 0.968 |
42DAP/41DAP | 0.92191 | 0.649 |
43DAP/42DAP | 1.10571 | 0.192 |
47DAP/43DAP | 0.87486 | 0.597 |
52DAP/47DAP | 1.03452 | 0.9 |
57DAP/52DAP | 0.9527 | 0.484 |
57DAP/7DAP | 0.97983 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67308 | 0.074 |
17DAP/reference | 0.97567 | 0.518 |
27DAP/reference | 1.04089 | 0.804 |
39DAP/reference | 1.27495 | 0.03 |
41DAP/reference | 1.81812 | 0.018 |
42DAP/reference | 1.2485 | 0.132 |
43DAP/reference | 1.33077 | 0.212 |
47DAP/reference | 0.99632 | 1 |
52DAP/reference | 1.11461 | 0.636 |
57DAP/reference | 0.76594 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93803 | 0.457 |
17DAP/reference | 1.18164 | 0.031 |
27DAP/reference | 1.06827 | 0.847 |
39DAP/reference | 1.2393 | 0.15 |
41DAP/reference | 1.18638 | 0.241 |
42DAP/reference | 1.16004 | 0.105 |
43DAP/reference | 0.91388 | 0.385 |
47DAP/reference | 0.94647 | 0.227 |
52DAP/reference | 1.40867 | 0.006 |
57DAP/reference | 1.1286 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76625 | 0.05 |
17DAP/reference | 0.89539 | 0.358 |
27DAP/reference | 0.94052 | 0.27 |
39DAP/reference | 0.90509 | 0.111 |
41DAP/reference | 0.96072 | 0.512 |
42DAP/reference | 0.89915 | 0.287 |
43DAP/reference | 0.96177 | 0.523 |
47DAP/reference | 0.86048 | 0.06 |
52DAP/reference | 1.00567 | 0.838 |
57DAP/reference | 0.60776 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96872 | 1 |
26DAP/20DAP | 0.92627 | 0.512 |
34DAP/26DAP | 1.07676 | 1 |
51DAP/34DAP | 1.002 | 0.883 |
52DAP/51DAP | 1.07556 | 0.676 |
53DAP/52DAP | 1.09254 | 0.296 |
55DAP/53DAP | 1.01698 | 0.964 |
57DAP/55DAP | 0.98632 | 0.925 |
62DAP/57DAP | 1.00136 | 1 |
68DAP/62DAP | 1.01503 | 0.914 |
68DAP/14DAP | 0.88518 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.46372 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 8.64702 | |
Mature Green Tomato/Ripe Tomato | 2.11896 | 0.02 |
Immature Eggplant/Mature Eggplant | 0.66695 | 0.062 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 3.541 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.14171 | 0.574 |
1-1-2/M82 | 0.85624 | 0.958 |
12-2/M82 | 0.95194 | |
12-4/M82 | 1.25463 | 1 |
1-3/M82 | 0.85408 | 0.378 |
2-1-1/M82 | 0.97484 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08761 | 0.594 |
3-2/M82 | 1.00405 | |
4-1-1/M82 | 0.74452 | |
4-1/M82 | 1.16812 | 0.853 |
4-3-2/M82 | 1.02196 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9665 | 1 |
6-2/M82 | 0.60331 | 1 |
6-3/M82 | 1.07759 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.81286 | 0.578 |
9-3-2/M82 | 0.81744 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07631 | 0.277 |
IL2-6/WTpooled | 1.0575 | 1 |
IL7-5/WTpooled | 0.72385 | |
IL7-3/WTpooled | 0.97664 | 1 |
IL12-4/WTpooled | 0.85825 | 1 |
IL1-4/WTpooled | 1.01776 | 1 |
WT/WTpooled | 1.05719 | 0.774 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09717 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02034 | 0.921 |
DC3000/delta hrp 6h | 1.09077 | 1 |
DC3000/delta hrp 12h | 1.01095 | 1 |
DC3000/delta hrp 24h | 4.32421 | 0.045 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25651 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.08651 | 0.443 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.6795 | 0.328 |
Exp 36h | 1.08497 | 1 |
Exp 60h | 0.494 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01399 | 1 |
Var 0h | 1.22616 | 0.325 |
Var 12h I row2-row1 | 0.98877 | 1 |
Var 12h NI row2-row1 | 1.04711 | 1 |
Var 36h I row2-row1 | 1.12035 | 0.908 |
Var 36h NI row2-row1 | 0.80318 | 1 |
Var 60h I row2-row1 | 0.91005 | 0.439 |
Var 60h NI row2-row1 | 1.00154 | 1 |
Time course 0hI-0hNI | 1.00274 | 1 |
Time course 12hI-12hNI | 0.95707 | 0.562 |
Time course 36hI-36hNI | 1.14707 | 0.101 |
Time course 60hI-60hNI | 1.00532 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07932 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.77929 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.76711 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98077 | 0.22 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87993 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19412 | 0.307 |
Manapal/WT (break) | 0.66404 | 1 |
Manapal/WT (red) | 1.45369 | 0.164 |
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