Expression of 1-1-1.3.10.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98778 | 0.83 |
27DAP/17DAP | 1.11781 | 0.845 |
39DAP/27DAP | 1.01151 | 1 |
41DAP/39DAP | 1.15309 | 0.451 |
42DAP/41DAP | 1.06382 | 0.937 |
43DAP/42DAP | 0.9446 | 0.864 |
47DAP/43DAP | 0.90572 | 0.68 |
52DAP/47DAP | 1.15211 | 0.637 |
57DAP/52DAP | 0.86336 | 0.702 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16176 | 0.062 |
17DAP/reference | 1.1295 | 0.068 |
27DAP/reference | 1.02829 | 0.996 |
39DAP/reference | 1.03831 | 0.218 |
41DAP/reference | 1.31621 | 0.018 |
42DAP/reference | 1.08327 | 0.119 |
43DAP/reference | 1.00776 | 0.942 |
47DAP/reference | 1.00608 | 0.764 |
52DAP/reference | 1.02425 | 0.8 |
57DAP/reference | 0.84147 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92188 | 0.47 |
27DAP/17DAP | 1.07679 | 0.811 |
39DAP/27DAP | 1.00826 | 0.862 |
41DAP/39DAP | 0.97346 | 0.923 |
42DAP/41DAP | 1.13061 | 0.234 |
43DAP/42DAP | 1.00911 | 0.788 |
47DAP/43DAP | 1.11158 | 0.182 |
52DAP/47DAP | 0.96972 | 0.902 |
57DAP/52DAP | 0.96249 | 0.632 |
57DAP/7DAP | 1.02075 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.349 | 0.048 |
17DAP/reference | 1.60434 | 0.006 |
27DAP/reference | 1.51297 | 0.007 |
39DAP/reference | 1.85105 | 0.005 |
41DAP/reference | 1.54813 | 0.02 |
42DAP/reference | 1.98936 | 0.012 |
43DAP/reference | 1.83711 | 0.007 |
47DAP/reference | 1.19084 | 0.632 |
52DAP/reference | 1.55746 | 0.007 |
57DAP/reference | 1.35552 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2654 | 0.068 |
17DAP/reference | 1.21439 | 0.079 |
27DAP/reference | 1.03591 | 1 |
39DAP/reference | 1.13042 | 0.29 |
41DAP/reference | 1.15278 | 0.248 |
42DAP/reference | 1.03165 | 0.934 |
43DAP/reference | 1.23283 | 0.575 |
47DAP/reference | 0.99128 | 0.625 |
52DAP/reference | 1.25136 | 0.006 |
57DAP/reference | 1.35803 | 0.038 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34106 | 0.024 |
17DAP/reference | 1.26969 | 0.217 |
27DAP/reference | 1.47918 | 0.018 |
39DAP/reference | 1.3331 | 0.01 |
41DAP/reference | 1.2954 | 0.027 |
42DAP/reference | 1.17413 | 0.408 |
43DAP/reference | 1.24056 | 0.223 |
47DAP/reference | 1.03007 | 1 |
52DAP/reference | 1.24976 | 0.198 |
57DAP/reference | 0.81029 | 0.131 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.7467 | 0.44 |
26DAP/20DAP | 1.03878 | 0.962 |
34DAP/26DAP | 1.22053 | 0.819 |
51DAP/34DAP | 1.00489 | 0.967 |
52DAP/51DAP | 1.00122 | 1 |
53DAP/52DAP | 1.01881 | 0.91 |
55DAP/53DAP | 1.22315 | |
57DAP/55DAP | 0.9802 | 0.799 |
62DAP/57DAP | 1.10418 | 0.868 |
68DAP/62DAP | 0.76578 | 0.345 |
68DAP/14DAP | 0.70109 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.2818 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.27444 | |
Mature Green Tomato/Ripe Tomato | 0.87174 | 0.226 |
Immature Eggplant/Mature Eggplant | 0.95366 | 1 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 18.9895 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02487 | 1 |
1-1-2/M82 | 0.90655 | 1 |
12-2/M82 | 1.24794 | |
12-4/M82 | 1.09984 | 1 |
1-3/M82 | 0.98522 | 1 |
2-1-1/M82 | 1.32231 | 0.332 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98908 | 1 |
3-2/M82 | 1.0186 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.83269 | 1 |
4-3-2/M82 | 0.84807 | 0.487 |
4-3/M82 | 0.90145 | 1 |
5-3/M82 | 0.98841 | 1 |
6-2/M82 | 1.0439 | 1 |
6-3/M82 | 0.99229 | 1 |
7-1/M82 | 1.04387 | |
7-2/M82 | 0.98541 | 1 |
9-3-2/M82 | 0.88814 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.75219 | 0.365 |
IL2-6/WTpooled | 1.02909 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01462 | 1 |
IL12-4/WTpooled | 1.08802 | 0.785 |
IL1-4/WTpooled | 1.33059 | 0.426 |
WT/WTpooled | 0.9825 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0659 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06462 | 0.894 |
DC3000/delta hrp 6h | 1.04028 | 1 |
DC3000/delta hrp 12h | 1.1821 | 1 |
DC3000/delta hrp 24h | 0.8172 | 0.049 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98903 | 1 |
DC3000 delta B/DC3000 delta AB | 1.01675 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93074 | 1 |
Exp 36h | 0.85306 | 0.661 |
Exp 60h | 0.7555 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96489 | 1 |
Var 0h | 1.10481 | 0.421 |
Var 12h I row2-row1 | 0.99911 | 1 |
Var 12h NI row2-row1 | 0.78947 | 0.713 |
Var 36h I row2-row1 | 1.36936 | 0.742 |
Var 36h NI row2-row1 | 0.73606 | 0.852 |
Var 60h I row2-row1 | 0.92677 | 0.832 |
Var 60h NI row2-row1 | 0.95572 | 1 |
Time course 0hI-0hNI | 1.0406 | 0.662 |
Time course 12hI-12hNI | 0.96162 | 0.522 |
Time course 36hI-36hNI | 1.02235 | 0.722 |
Time course 60hI-60hNI | 0.83989 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.49422 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 1.1542 | 1 |
transgenic ySAMdc/azygous control (red) | 1.16713 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95021 | 0.14 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81082 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31488 | 0.105 |
Manapal/WT (break) | 1.41815 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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