Expression of 1-1-1.3.10.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.987780.83
27DAP/17DAP1.117810.845
39DAP/27DAP1.011511
41DAP/39DAP1.153090.451
42DAP/41DAP1.063820.937
43DAP/42DAP0.94460.864
47DAP/43DAP0.905720.68
52DAP/47DAP1.152110.637
57DAP/52DAP0.863360.702

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.161760.062
17DAP/reference1.12950.068
27DAP/reference1.028290.996
39DAP/reference1.038310.218
41DAP/reference1.316210.018
42DAP/reference1.083270.119
43DAP/reference1.007760.942
47DAP/reference1.006080.764
52DAP/reference1.024250.8
57DAP/reference0.841470.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.921880.47
27DAP/17DAP1.076790.811
39DAP/27DAP1.008260.862
41DAP/39DAP0.973460.923
42DAP/41DAP1.130610.234
43DAP/42DAP1.009110.788
47DAP/43DAP1.111580.182
52DAP/47DAP0.969720.902
57DAP/52DAP0.962490.632
57DAP/7DAP1.020751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.3490.048
17DAP/reference1.604340.006
27DAP/reference1.512970.007
39DAP/reference1.851050.005
41DAP/reference1.548130.02
42DAP/reference1.989360.012
43DAP/reference1.837110.007
47DAP/reference1.190840.632
52DAP/reference1.557460.007
57DAP/reference1.355520.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.26540.068
17DAP/reference1.214390.079
27DAP/reference1.035911
39DAP/reference1.130420.29
41DAP/reference1.152780.248
42DAP/reference1.031650.934
43DAP/reference1.232830.575
47DAP/reference0.991280.625
52DAP/reference1.251360.006
57DAP/reference1.358030.038

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.341060.024
17DAP/reference1.269690.217
27DAP/reference1.479180.018
39DAP/reference1.33310.01
41DAP/reference1.29540.027
42DAP/reference1.174130.408
43DAP/reference1.240560.223
47DAP/reference1.030071
52DAP/reference1.249760.198
57DAP/reference0.810290.131

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.74670.44
26DAP/20DAP1.038780.962
34DAP/26DAP1.220530.819
51DAP/34DAP1.004890.967
52DAP/51DAP1.001221
53DAP/52DAP1.018810.91
55DAP/53DAP1.22315
57DAP/55DAP0.98020.799
62DAP/57DAP1.104180.868
68DAP/62DAP0.765780.345
68DAP/14DAP0.701090.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.28180.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.27444
Mature Green Tomato/Ripe Tomato0.871740.226
Immature Eggplant/Mature Eggplant0.953661
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato18.9895

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.024871
1-1-2/M820.906551
12-2/M821.24794
12-4/M821.099841
1-3/M820.985221
2-1-1/M821.322310.332
2-1/M82N/AN/A
2-6/M820.989081
3-2/M821.01861
4-1-1/M82N/AN/A
4-1/M820.832691
4-3-2/M820.848070.487
4-3/M820.901451
5-3/M820.988411
6-2/M821.04391
6-3/M820.992291
7-1/M821.04387
7-2/M820.985411
9-3-2/M820.888140.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.752190.365
IL2-6/WTpooled1.029091
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.014621
IL12-4/WTpooled1.088020.785
IL1-4/WTpooled1.330590.426
WT/WTpooled0.98251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06590.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064620.894
DC3000/delta hrp 6h1.040281
DC3000/delta hrp 12h1.18211
DC3000/delta hrp 24h0.81720.049

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.989031
DC3000 delta B/DC3000 delta AB1.016751

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.930741
Exp 36h0.853060.661
Exp 60h0.75550.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964891
Var 0h1.104810.421
Var 12h I row2-row10.999111
Var 12h NI row2-row10.789470.713
Var 36h I row2-row11.369360.742
Var 36h NI row2-row10.736060.852
Var 60h I row2-row10.926770.832
Var 60h NI row2-row10.955721
Time course 0hI-0hNI1.04060.662
Time course 12hI-12hNI0.961620.522
Time course 36hI-36hNI1.022350.722
Time course 60hI-60hNI0.839890.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.494220.541
transgenic ySAMdc/azygous control (breaker)1.15421
transgenic ySAMdc/azygous control (red)1.167130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.950210.14

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.810820.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.314880.105
Manapal/WT (break)1.418150.381
Manapal/WT (red)N/AN/A