Expression of 1-1-1.3.13.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.950730.596
27DAP/17DAP1.113580.849
39DAP/27DAP0.891680.594
41DAP/39DAP0.956180.824
42DAP/41DAP1.063320.92
43DAP/42DAP1.102730.867
47DAP/43DAP1.160940.412
52DAP/47DAP0.823120.543
57DAP/52DAP0.997650.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.041130.265
17DAP/reference1.01650.399
27DAP/reference1.032950.394
39DAP/reference1.020960.434
41DAP/reference0.989610.814
42DAP/reference0.991870.469
43DAP/reference1.02790.569
47DAP/reference0.997880.674
52DAP/reference0.999120.768
57DAP/reference1.067670.141

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009640.975
27DAP/17DAP0.950830.782
39DAP/27DAP0.990730.977
41DAP/39DAP1.107790.603
42DAP/41DAP1.003590.929
43DAP/42DAP0.934520.246
47DAP/43DAP0.990670.971
52DAP/47DAP0.958920.807
57DAP/52DAP1.12570.385
57DAP/7DAP0.958151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92810.095
17DAP/reference0.952710.049
27DAP/reference0.975250.348
39DAP/reference0.974730.198
41DAP/reference1.013340.745
42DAP/reference0.947660.151
43DAP/reference1.04930.037
47DAP/reference0.970380.222
52DAP/reference0.964960.163
57DAP/reference1.000840.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00041
17DAP/reference1.037770.257
27DAP/reference1.102960.488
39DAP/reference0.974110.404
41DAP/reference0.96520.307
42DAP/reference1.07660.476
43DAP/reference1.064830.324
47DAP/reference1.037120.247
52DAP/reference1.069930.208
57DAP/reference1.067520.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997820.526
17DAP/reference0.955010.239
27DAP/reference1.007820.934
39DAP/reference1.096410.078
41DAP/reference1.020920.889
42DAP/reference0.954030.445
43DAP/reference0.985660.614
47DAP/reference1.012210.994
52DAP/reference1.008440.965
57DAP/reference1.003021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986981
26DAP/20DAP1.132970.587
34DAP/26DAP1.012321
51DAP/34DAP0.976330.824
52DAP/51DAP1.050410.606
53DAP/52DAP0.989690.97
55DAP/53DAP1.011911
57DAP/55DAP1.251780.841
62DAP/57DAP0.894410.05
68DAP/62DAP1.046710.866
68DAP/14DAP1.135420.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.043550.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.026531
Mature Green Tomato/Ripe Tomato1.032730.948
Immature Eggplant/Mature Eggplant1.15820.19
Ripe Pepper/Ripe Tomato0.857761
Mature Eggplant/Ripe Tomato1.105521

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.981720.961
1-1-2/M820.971081
12-2/M820.93010.955
12-4/M820.921031
1-3/M821.064940.479
2-1-1/M821.086821
2-1/M820.81309
2-6/M820.983251
3-2/M820.884290.752
4-1-1/M820.965991
4-1/M820.996921
4-3-2/M820.987381
4-3/M821.034281
5-3/M820.997391
6-2/M821.123040.235
6-3/M821.068971
7-1/M821.012661
7-2/M820.961111
9-3-2/M821.003551

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.13689
IL2-6/WTpooled0.88990.473
IL7-5/WTpooled0.809971
IL7-3/WTpooled0.975521
IL12-4/WTpooled0.848820.71
IL1-4/WTpooled0.956380.834
WT/WTpooled0.925411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.788781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.141190.846
DC3000/delta hrp 6h1.217411
DC3000/delta hrp 12h1.086521
DC3000/delta hrp 24h1.089150.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.133940.042
DC3000 delta B/DC3000 delta AB1.090860.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.072341
Exp 36h1.253090.489
Exp 60h1.558390.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98311
Var 0h0.741180.457
Var 12h I row2-row11.24890.379
Var 12h NI row2-row10.900780.82
Var 36h I row2-row10.863881
Var 36h NI row2-row10.839040.645
Var 60h I row2-row10.971840.952
Var 60h NI row2-row11.07771
Time course 0hI-0hNI1.035720.867
Time course 12hI-12hNI1.04360.827
Time course 36hI-36hNI1.048250.722
Time course 60hI-60hNI1.520880.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.213710.408
transgenic ySAMdc/azygous control (breaker)1.129190.248
transgenic ySAMdc/azygous control (red)1.214760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.989190.231

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.865360.172
Manapal/WT (break)0.848891
Manapal/WT (red)0.923980.503