Expression of 1-1-1.3.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.929720.496
27DAP/17DAP1.026830.92
39DAP/27DAP0.986920.782
41DAP/39DAP1.016210.844
42DAP/41DAP1.010231
43DAP/42DAP1.017841
47DAP/43DAP1.061280.776
52DAP/47DAP0.984280.932
57DAP/52DAP0.956130.882

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.066860.207
17DAP/reference0.97480.474
27DAP/reference1.00720.88
39DAP/reference0.960150.541
41DAP/reference0.982420.667
42DAP/reference1.02770.125
43DAP/reference1.032230.425
47DAP/reference1.015920.627
52DAP/reference0.99180.636
57DAP/reference1.044420.447

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.017650.841
27DAP/17DAP0.996010.943
39DAP/27DAP1.015770.751
41DAP/39DAP1.034110.801
42DAP/41DAP0.981640.768
43DAP/42DAP0.972540.466
47DAP/43DAP1.007830.973
52DAP/47DAP1.044510.823
57DAP/52DAP0.982890.673
57DAP/7DAP1.012061

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995350.682
17DAP/reference1.00581
27DAP/reference0.952760.094
39DAP/reference0.988210.552
41DAP/reference1.085690.177
42DAP/reference1.072510.059
43DAP/reference1.012710.83
47DAP/reference0.973660.671
52DAP/reference1.057630.229
57DAP/reference1.029540.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092850.582
17DAP/reference0.983310.594
27DAP/reference1.005051
39DAP/reference1.006571
41DAP/reference0.919110.07
42DAP/reference0.963720.189
43DAP/reference1.005541
47DAP/reference1.010181
52DAP/reference1.07080.223
57DAP/reference1.236130.277

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.966670.268
17DAP/reference1.01220.824
27DAP/reference0.99930.883
39DAP/reference1.057210.157
41DAP/reference0.968470.56
42DAP/reference0.9280.108
43DAP/reference0.978560.365
47DAP/reference1.011241
52DAP/reference0.996630.888
57DAP/reference1.017090.856

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.006160.966
26DAP/20DAP1.027910.931
34DAP/26DAP1.053520.819
51DAP/34DAP0.997950.96
52DAP/51DAP1.006080.939
53DAP/52DAP1.064490.806
55DAP/53DAP0.892840.632
57DAP/55DAP0.875250.56
62DAP/57DAP1.11070.767
68DAP/62DAP0.937880.769
68DAP/14DAP1.077010.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.040350.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.348090.078
Mature Green Tomato/Ripe Tomato0.98570.715
Immature Eggplant/Mature Eggplant1.757910.053
Ripe Pepper/Ripe Tomato0.744430.224
Mature Eggplant/Ripe Tomato0.484820.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94360.944
1-1-2/M820.933220.804
12-2/M820.893630.955
12-4/M820.972721
1-3/M820.966270.501
2-1-1/M820.924540.465
2-1/M821.058751
2-6/M820.982431
3-2/M821.00421
4-1-1/M821.156371
4-1/M820.935360.737
4-3-2/M820.745880.487
4-3/M820.895751
5-3/M820.953641
6-2/M820.964381
6-3/M821.017151
7-1/M821.010511
7-2/M820.878210.796
9-3-2/M820.881380.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.636120.243
IL2-6/WTpooled1.071870.788
IL7-5/WTpooled0.823761
IL7-3/WTpooled0.831790.418
IL12-4/WTpooled1.194390.839
IL1-4/WTpooled0.997041
WT/WTpooled1.031341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.449920.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040960.921
DC3000/delta hrp 6h1.021090.95
DC3000/delta hrp 12h0.94521
DC3000/delta hrp 24h0.979960.887

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.05750.355
DC3000 delta B/DC3000 delta AB1.081840.389

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.10711
Exp 36h2.442420.409
Exp 60h1.844830.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017741
Var 0h0.861341
Var 12h I row2-row11.217010.228
Var 12h NI row2-row10.82910.627
Var 36h I row2-row10.853661
Var 36h NI row2-row10.842950.645
Var 60h I row2-row11.107831
Var 60h NI row2-row10.936620.977
Time course 0hI-0hNI0.994920.936
Time course 12hI-12hNI1.011940.868
Time course 36hI-36hNI1.008611
Time course 60hI-60hNI1.183760.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.869730.377
transgenic ySAMdc/azygous control (breaker)0.966331
transgenic ySAMdc/azygous control (red)1.227040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016560.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.271440.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.642420.172
Manapal/WT (break)0.683140.299
Manapal/WT (red)0.573890.181