Expression of 1-1-1.3.13.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92972 | 0.496 |
27DAP/17DAP | 1.02683 | 0.92 |
39DAP/27DAP | 0.98692 | 0.782 |
41DAP/39DAP | 1.01621 | 0.844 |
42DAP/41DAP | 1.01023 | 1 |
43DAP/42DAP | 1.01784 | 1 |
47DAP/43DAP | 1.06128 | 0.776 |
52DAP/47DAP | 0.98428 | 0.932 |
57DAP/52DAP | 0.95613 | 0.882 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06686 | 0.207 |
17DAP/reference | 0.9748 | 0.474 |
27DAP/reference | 1.0072 | 0.88 |
39DAP/reference | 0.96015 | 0.541 |
41DAP/reference | 0.98242 | 0.667 |
42DAP/reference | 1.0277 | 0.125 |
43DAP/reference | 1.03223 | 0.425 |
47DAP/reference | 1.01592 | 0.627 |
52DAP/reference | 0.9918 | 0.636 |
57DAP/reference | 1.04442 | 0.447 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01765 | 0.841 |
27DAP/17DAP | 0.99601 | 0.943 |
39DAP/27DAP | 1.01577 | 0.751 |
41DAP/39DAP | 1.03411 | 0.801 |
42DAP/41DAP | 0.98164 | 0.768 |
43DAP/42DAP | 0.97254 | 0.466 |
47DAP/43DAP | 1.00783 | 0.973 |
52DAP/47DAP | 1.04451 | 0.823 |
57DAP/52DAP | 0.98289 | 0.673 |
57DAP/7DAP | 1.01206 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99535 | 0.682 |
17DAP/reference | 1.0058 | 1 |
27DAP/reference | 0.95276 | 0.094 |
39DAP/reference | 0.98821 | 0.552 |
41DAP/reference | 1.08569 | 0.177 |
42DAP/reference | 1.07251 | 0.059 |
43DAP/reference | 1.01271 | 0.83 |
47DAP/reference | 0.97366 | 0.671 |
52DAP/reference | 1.05763 | 0.229 |
57DAP/reference | 1.02954 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09285 | 0.582 |
17DAP/reference | 0.98331 | 0.594 |
27DAP/reference | 1.00505 | 1 |
39DAP/reference | 1.00657 | 1 |
41DAP/reference | 0.91911 | 0.07 |
42DAP/reference | 0.96372 | 0.189 |
43DAP/reference | 1.00554 | 1 |
47DAP/reference | 1.01018 | 1 |
52DAP/reference | 1.0708 | 0.223 |
57DAP/reference | 1.23613 | 0.277 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96667 | 0.268 |
17DAP/reference | 1.0122 | 0.824 |
27DAP/reference | 0.9993 | 0.883 |
39DAP/reference | 1.05721 | 0.157 |
41DAP/reference | 0.96847 | 0.56 |
42DAP/reference | 0.928 | 0.108 |
43DAP/reference | 0.97856 | 0.365 |
47DAP/reference | 1.01124 | 1 |
52DAP/reference | 0.99663 | 0.888 |
57DAP/reference | 1.01709 | 0.856 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00616 | 0.966 |
26DAP/20DAP | 1.02791 | 0.931 |
34DAP/26DAP | 1.05352 | 0.819 |
51DAP/34DAP | 0.99795 | 0.96 |
52DAP/51DAP | 1.00608 | 0.939 |
53DAP/52DAP | 1.06449 | 0.806 |
55DAP/53DAP | 0.89284 | 0.632 |
57DAP/55DAP | 0.87525 | 0.56 |
62DAP/57DAP | 1.1107 | 0.767 |
68DAP/62DAP | 0.93788 | 0.769 |
68DAP/14DAP | 1.07701 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04035 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.34809 | 0.078 |
Mature Green Tomato/Ripe Tomato | 0.9857 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.75791 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.74443 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.48482 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9436 | 0.944 |
1-1-2/M82 | 0.93322 | 0.804 |
12-2/M82 | 0.89363 | 0.955 |
12-4/M82 | 0.97272 | 1 |
1-3/M82 | 0.96627 | 0.501 |
2-1-1/M82 | 0.92454 | 0.465 |
2-1/M82 | 1.05875 | 1 |
2-6/M82 | 0.98243 | 1 |
3-2/M82 | 1.0042 | 1 |
4-1-1/M82 | 1.15637 | 1 |
4-1/M82 | 0.93536 | 0.737 |
4-3-2/M82 | 0.74588 | 0.487 |
4-3/M82 | 0.89575 | 1 |
5-3/M82 | 0.95364 | 1 |
6-2/M82 | 0.96438 | 1 |
6-3/M82 | 1.01715 | 1 |
7-1/M82 | 1.01051 | 1 |
7-2/M82 | 0.87821 | 0.796 |
9-3-2/M82 | 0.88138 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.63612 | 0.243 |
IL2-6/WTpooled | 1.07187 | 0.788 |
IL7-5/WTpooled | 0.82376 | 1 |
IL7-3/WTpooled | 0.83179 | 0.418 |
IL12-4/WTpooled | 1.19439 | 0.839 |
IL1-4/WTpooled | 0.99704 | 1 |
WT/WTpooled | 1.03134 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.44992 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04096 | 0.921 |
DC3000/delta hrp 6h | 1.02109 | 0.95 |
DC3000/delta hrp 12h | 0.9452 | 1 |
DC3000/delta hrp 24h | 0.97996 | 0.887 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0575 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.08184 | 0.389 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1071 | 1 |
Exp 36h | 2.44242 | 0.409 |
Exp 60h | 1.84483 | 0.22 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01774 | 1 |
Var 0h | 0.86134 | 1 |
Var 12h I row2-row1 | 1.21701 | 0.228 |
Var 12h NI row2-row1 | 0.8291 | 0.627 |
Var 36h I row2-row1 | 0.85366 | 1 |
Var 36h NI row2-row1 | 0.84295 | 0.645 |
Var 60h I row2-row1 | 1.10783 | 1 |
Var 60h NI row2-row1 | 0.93662 | 0.977 |
Time course 0hI-0hNI | 0.99492 | 0.936 |
Time course 12hI-12hNI | 1.01194 | 0.868 |
Time course 36hI-36hNI | 1.00861 | 1 |
Time course 60hI-60hNI | 1.18376 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86973 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.96633 | 1 |
transgenic ySAMdc/azygous control (red) | 1.22704 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01656 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.27144 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.64242 | 0.172 |
Manapal/WT (break) | 0.68314 | 0.299 |
Manapal/WT (red) | 0.57389 | 0.181 |
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