Expression of 1-1-1.3.13.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.923620.568
27DAP/17DAP0.944890.902
39DAP/27DAP1.036740.84
41DAP/39DAP1.191720.54
42DAP/41DAP1.190040.813
43DAP/42DAP0.91970.801
47DAP/43DAP0.876970.599
52DAP/47DAP1.391540.48
57DAP/52DAP0.965510.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.980850.476
17DAP/reference1.023270.282
27DAP/reference0.994190.797
39DAP/reference0.952420.5
41DAP/reference1.062970.203
42DAP/reference0.914940.035
43DAP/reference1.030370.705
47DAP/reference0.879550.003
52DAP/reference0.902710.147
57DAP/reference0.854340.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.95480.484
27DAP/17DAP1.04380.887
39DAP/27DAP1.027750.698
41DAP/39DAP0.952480.875
42DAP/41DAP0.985610.812
43DAP/42DAP1.003441
47DAP/43DAP1.026170.812
52DAP/47DAP0.987860.925
57DAP/52DAP0.985890.742
57DAP/7DAP1.033251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959580.326
17DAP/reference0.853190.016
27DAP/reference0.860860.01
39DAP/reference0.916540.198
41DAP/reference0.953850.259
42DAP/reference0.811410.034
43DAP/reference0.772510.105
47DAP/reference0.938010.079
52DAP/reference0.734860.019
57DAP/reference0.792890.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079730.164
17DAP/reference0.996060.786
27DAP/reference0.990290.642
39DAP/reference0.916640.062
41DAP/reference0.894260.013
42DAP/reference0.940360.189
43DAP/reference0.961780.494
47DAP/reference1.038550.816
52DAP/reference0.895180.047
57DAP/reference1.044880.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919380.183
17DAP/reference1.009220.988
27DAP/reference0.900560.14
39DAP/reference0.869450.111
41DAP/reference0.845320.096
42DAP/reference0.733730.015
43DAP/reference0.858720.049
47DAP/reference0.895490.168
52DAP/reference0.670480.076
57DAP/reference0.65550.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008290.966
26DAP/20DAP0.941730.512
34DAP/26DAP0.868830.399
51DAP/34DAP0.931990.402
52DAP/51DAP0.961251
53DAP/52DAP1.051460.58
55DAP/53DAP1.049891
57DAP/55DAP1.022720.975
62DAP/57DAP1.14330.185
68DAP/62DAP0.968180.81
68DAP/14DAP0.855221

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.952140.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.431610.089
Mature Green Tomato/Ripe Tomato0.94410.522
Immature Eggplant/Mature Eggplant1.395330.05
Ripe Pepper/Ripe Tomato1.249731
Mature Eggplant/Ripe Tomato1.720640.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.934630.536
1-1-2/M820.961611
12-2/M821.19841
12-4/M820.96841
1-3/M820.987591
2-1-1/M821.154590.689
2-1/M821.171150.335
2-6/M820.993431
3-2/M820.988391
4-1-1/M820.954231
4-1/M821.12117
4-3-2/M820.9741
4-3/M820.882711
5-3/M821.013781
6-2/M821.001731
6-3/M821.08321
7-1/M821.009741
7-2/M820.994241
9-3-2/M820.978671

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.16560.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.033321
IL12-4/WTpooled1.024341
IL1-4/WTpooled1.088131
WT/WTpooled0.971031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.009081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.113210.894
DC3000/delta hrp 6h0.955030.95
DC3000/delta hrp 12h1.109341
DC3000/delta hrp 24h1.184150.243

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.164790.06
DC3000 delta B/DC3000 delta AB1.082510.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.052211
Exp 36h1.119111
Exp 60h1.242760.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97591
Var 0h0.876140.933
Var 12h I row2-row11.078010.406
Var 12h NI row2-row10.946320.82
Var 36h I row2-row11.086521
Var 36h NI row2-row10.799990.584
Var 60h I row2-row10.965480.293
Var 60h NI row2-row11.109810.904
Time course 0hI-0hNI1.02020.852
Time course 12hI-12hNI1.019050.82
Time course 36hI-36hNI1.096340.19
Time course 60hI-60hNI1.919320.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.090850.431
transgenic ySAMdc/azygous control (breaker)0.927910.251
transgenic ySAMdc/azygous control (red)1.143090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.004610.766

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.6720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.063831
Manapal/WT (break)0.968711
Manapal/WT (red)0.84810.229