Expression of 1-1-1.3.13.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92362 | 0.568 |
27DAP/17DAP | 0.94489 | 0.902 |
39DAP/27DAP | 1.03674 | 0.84 |
41DAP/39DAP | 1.19172 | 0.54 |
42DAP/41DAP | 1.19004 | 0.813 |
43DAP/42DAP | 0.9197 | 0.801 |
47DAP/43DAP | 0.87697 | 0.599 |
52DAP/47DAP | 1.39154 | 0.48 |
57DAP/52DAP | 0.96551 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98085 | 0.476 |
17DAP/reference | 1.02327 | 0.282 |
27DAP/reference | 0.99419 | 0.797 |
39DAP/reference | 0.95242 | 0.5 |
41DAP/reference | 1.06297 | 0.203 |
42DAP/reference | 0.91494 | 0.035 |
43DAP/reference | 1.03037 | 0.705 |
47DAP/reference | 0.87955 | 0.003 |
52DAP/reference | 0.90271 | 0.147 |
57DAP/reference | 0.85434 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9548 | 0.484 |
27DAP/17DAP | 1.0438 | 0.887 |
39DAP/27DAP | 1.02775 | 0.698 |
41DAP/39DAP | 0.95248 | 0.875 |
42DAP/41DAP | 0.98561 | 0.812 |
43DAP/42DAP | 1.00344 | 1 |
47DAP/43DAP | 1.02617 | 0.812 |
52DAP/47DAP | 0.98786 | 0.925 |
57DAP/52DAP | 0.98589 | 0.742 |
57DAP/7DAP | 1.03325 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95958 | 0.326 |
17DAP/reference | 0.85319 | 0.016 |
27DAP/reference | 0.86086 | 0.01 |
39DAP/reference | 0.91654 | 0.198 |
41DAP/reference | 0.95385 | 0.259 |
42DAP/reference | 0.81141 | 0.034 |
43DAP/reference | 0.77251 | 0.105 |
47DAP/reference | 0.93801 | 0.079 |
52DAP/reference | 0.73486 | 0.019 |
57DAP/reference | 0.79289 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07973 | 0.164 |
17DAP/reference | 0.99606 | 0.786 |
27DAP/reference | 0.99029 | 0.642 |
39DAP/reference | 0.91664 | 0.062 |
41DAP/reference | 0.89426 | 0.013 |
42DAP/reference | 0.94036 | 0.189 |
43DAP/reference | 0.96178 | 0.494 |
47DAP/reference | 1.03855 | 0.816 |
52DAP/reference | 0.89518 | 0.047 |
57DAP/reference | 1.04488 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91938 | 0.183 |
17DAP/reference | 1.00922 | 0.988 |
27DAP/reference | 0.90056 | 0.14 |
39DAP/reference | 0.86945 | 0.111 |
41DAP/reference | 0.84532 | 0.096 |
42DAP/reference | 0.73373 | 0.015 |
43DAP/reference | 0.85872 | 0.049 |
47DAP/reference | 0.89549 | 0.168 |
52DAP/reference | 0.67048 | 0.076 |
57DAP/reference | 0.6555 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00829 | 0.966 |
26DAP/20DAP | 0.94173 | 0.512 |
34DAP/26DAP | 0.86883 | 0.399 |
51DAP/34DAP | 0.93199 | 0.402 |
52DAP/51DAP | 0.96125 | 1 |
53DAP/52DAP | 1.05146 | 0.58 |
55DAP/53DAP | 1.04989 | 1 |
57DAP/55DAP | 1.02272 | 0.975 |
62DAP/57DAP | 1.1433 | 0.185 |
68DAP/62DAP | 0.96818 | 0.81 |
68DAP/14DAP | 0.85522 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95214 | 0.422 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.43161 | 0.089 |
Mature Green Tomato/Ripe Tomato | 0.9441 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.39533 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.24973 | 1 |
Mature Eggplant/Ripe Tomato | 1.72064 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93463 | 0.536 |
1-1-2/M82 | 0.96161 | 1 |
12-2/M82 | 1.1984 | 1 |
12-4/M82 | 0.9684 | 1 |
1-3/M82 | 0.98759 | 1 |
2-1-1/M82 | 1.15459 | 0.689 |
2-1/M82 | 1.17115 | 0.335 |
2-6/M82 | 0.99343 | 1 |
3-2/M82 | 0.98839 | 1 |
4-1-1/M82 | 0.95423 | 1 |
4-1/M82 | 1.12117 | |
4-3-2/M82 | 0.974 | 1 |
4-3/M82 | 0.88271 | 1 |
5-3/M82 | 1.01378 | 1 |
6-2/M82 | 1.00173 | 1 |
6-3/M82 | 1.0832 | 1 |
7-1/M82 | 1.00974 | 1 |
7-2/M82 | 0.99424 | 1 |
9-3-2/M82 | 0.97867 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.1656 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.03332 | 1 |
IL12-4/WTpooled | 1.02434 | 1 |
IL1-4/WTpooled | 1.08813 | 1 |
WT/WTpooled | 0.97103 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00908 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11321 | 0.894 |
DC3000/delta hrp 6h | 0.95503 | 0.95 |
DC3000/delta hrp 12h | 1.10934 | 1 |
DC3000/delta hrp 24h | 1.18415 | 0.243 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16479 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.08251 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05221 | 1 |
Exp 36h | 1.11911 | 1 |
Exp 60h | 1.24276 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9759 | 1 |
Var 0h | 0.87614 | 0.933 |
Var 12h I row2-row1 | 1.07801 | 0.406 |
Var 12h NI row2-row1 | 0.94632 | 0.82 |
Var 36h I row2-row1 | 1.08652 | 1 |
Var 36h NI row2-row1 | 0.79999 | 0.584 |
Var 60h I row2-row1 | 0.96548 | 0.293 |
Var 60h NI row2-row1 | 1.10981 | 0.904 |
Time course 0hI-0hNI | 1.0202 | 0.852 |
Time course 12hI-12hNI | 1.01905 | 0.82 |
Time course 36hI-36hNI | 1.09634 | 0.19 |
Time course 60hI-60hNI | 1.91932 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09085 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 0.92791 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.14309 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00461 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.672 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06383 | 1 |
Manapal/WT (break) | 0.96871 | 1 |
Manapal/WT (red) | 0.8481 | 0.229 |
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