Expression of 1-1-1.3.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.047590.904
27DAP/17DAP0.941250.908
39DAP/27DAP1.02880.899
41DAP/39DAP1.105430.758
42DAP/41DAP1.182380.745
43DAP/42DAP0.949220.892
47DAP/43DAP0.761610.251
52DAP/47DAP1.187050.63
57DAP/52DAP1.026761

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.157020.037
17DAP/reference1.069770.1
27DAP/reference1.15570.084
39DAP/reference1.070590.165
41DAP/reference1.146490.029
42DAP/reference1.303690.001
43DAP/reference1.033850.787
47DAP/reference1.246430.002
52DAP/reference1.020920.766
57DAP/reference0.855530.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996090.871
27DAP/17DAP1.033650.9
39DAP/27DAP1.045740.659
41DAP/39DAP0.924770.567
42DAP/41DAP1.085580.257
43DAP/42DAP1.017240.664
47DAP/43DAP1.017220.914
52DAP/47DAP0.985050.93
57DAP/52DAP1.001830.907
57DAP/7DAP1.058970.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042750.545
17DAP/reference1.053860.269
27DAP/reference1.014490.804
39DAP/reference0.990320.307
41DAP/reference0.919420.098
42DAP/reference0.875570.011
43DAP/reference0.988470.58
47DAP/reference1.013881
52DAP/reference1.0281
57DAP/reference0.990730.589

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.186710.196
17DAP/reference1.282210.086
27DAP/reference1.28060.182
39DAP/reference1.241870.272
41DAP/reference1.223120.335
42DAP/reference1.164040.185
43DAP/reference0.969790.569
47DAP/reference1.042930.544
52DAP/reference0.922590.121
57DAP/reference0.874440.092

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081290.258
17DAP/reference1.091010.217
27DAP/reference1.072940.227
39DAP/reference1.068210.163
41DAP/reference0.97550.293
42DAP/reference1.230190.046
43DAP/reference1.407220.045
47DAP/reference1.584620.017
52DAP/reference1.187370.106
57DAP/reference1.655490.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP3.432890.966
26DAP/20DAP1.169050.325
34DAP/26DAP0.927580.343
51DAP/34DAP1.044610.775
52DAP/51DAP0.920741
53DAP/52DAP1.03526
55DAP/53DAP0.80641
57DAP/55DAP1.109870.643
62DAP/57DAP0.972440.994
68DAP/62DAP0.689080.135
68DAP/14DAP0.937161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.257770.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.905130.458
Mature Green Tomato/Ripe Tomato1.381580.399
Immature Eggplant/Mature Eggplant1.286040.054
Ripe Pepper/Ripe Tomato1.067671
Mature Eggplant/Ripe Tomato1.365581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971130.944
1-1-2/M821.082911
12-2/M821.011071
12-4/M820.908320.619
1-3/M821.145280.277
2-1-1/M821.207640.422
2-1/M821.17309
2-6/M820.963751
3-2/M820.996351
4-1-1/M821.051661
4-1/M821.059380.512
4-3-2/M821.090351
4-3/M821.395951
5-3/M821.000851
6-2/M821.052041
6-3/M820.991611
7-1/M820.906771
7-2/M821.057781
9-3-2/M821.216031

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.971961
IL2-6/WTpooled0.950581
IL7-5/WTpooled1.080921
IL7-3/WTpooled1.046871
IL12-4/WTpooled1.04940.737
IL1-4/WTpooled1.025031
WT/WTpooled1.079710.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.935021

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.982361
DC3000/delta hrp 6h1.174691
DC3000/delta hrp 12h1.388381
DC3000/delta hrp 24h1.08080.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.257580.076
DC3000 delta B/DC3000 delta AB1.234210.147

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.176191
Exp 36h0.955970.879
Exp 60h1.209851

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.958521
Var 0h0.805371
Var 12h I row2-row11.070630.613
Var 12h NI row2-row11.004711
Var 36h I row2-row11.19560.742
Var 36h NI row2-row11.01761
Var 60h I row2-row11.034280.543
Var 60h NI row2-row10.988881
Time course 0hI-0hNI1.048690.719
Time course 12hI-12hNI1.024030.786
Time course 36hI-36hNI1.308510.005
Time course 60hI-60hNI2.038590.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.95470.662
transgenic ySAMdc/azygous control (breaker)1.051741
transgenic ySAMdc/azygous control (red)1.129660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.109610.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.288640.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.318620.096
Manapal/WT (break)1.17360.381
Manapal/WT (red)1.127480.413