Expression of 1-1-1.3.16.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.068840.904
27DAP/17DAP0.931020.876
39DAP/27DAP1.139610.885
41DAP/39DAP1.185290.553
42DAP/41DAP0.964861
43DAP/42DAP0.964260.877
47DAP/43DAP1.049250.842
52DAP/47DAP1.130840.851
57DAP/52DAP1.031441

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.34550.071
17DAP/reference1.415720.021
27DAP/reference1.032111
39DAP/reference1.373290.025
41DAP/reference1.846940.014
42DAP/reference1.214790.007
43DAP/reference1.075910.812
47DAP/reference1.161070.024
52DAP/reference0.939680.23
57DAP/reference0.803720.029

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.047130.863
39DAP/27DAPN/AN/A
41DAP/39DAP0.90310.055
42DAP/41DAP1.054870.727
43DAP/42DAPN/AN/A
47DAP/43DAP1.041310.827
52DAP/47DAP1.0253
57DAP/52DAP1.016120.984
57DAP/7DAP0.974771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08185
17DAP/reference0.911280.049
27DAP/reference0.887730.012
39DAP/reference0.968850.23
41DAP/reference1.049310.655
42DAP/reference1.031530.076
43DAP/reference1.015280.873
47DAP/reference0.935710.383
52DAP/reference0.951170.061
57DAP/reference0.947660.101

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.424940.319
17DAP/reference1.657860.278
27DAP/reference1.275610.254
39DAP/reference1.046831
41DAP/reference1.279650.031
42DAP/reference1.289360.013
43DAP/reference1.343350.199
47DAP/reference1.451420.013
52DAP/reference1.179890.259
57DAP/reference1.56760.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.366430.545
17DAP/reference1.118470.631
27DAP/reference1.00710.843
39DAP/reference1.091860.578
41DAP/reference0.997040.826
42DAP/reference0.942340.445
43DAP/reference1.089960.867
47DAP/reference1.15140.324
52DAP/reference0.964680.65
57DAP/reference0.7920.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.579290.305
26DAP/20DAP0.922130.183
34DAP/26DAP1.000631
51DAP/34DAP0.979560.807
52DAP/51DAP1.008750.925
53DAP/52DAP0.76918
55DAP/53DAP0.96101
57DAP/55DAP1.227290.559
62DAP/57DAP1.108551
68DAP/62DAP0.660660.345
68DAP/14DAP0.523940.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.925620.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.062620.69
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.887980.804
12-2/M82N/AN/A
12-4/M821.043181
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.45965
3-2/M820.938921
4-1-1/M82N/AN/A
4-1/M820.664230.737
4-3-2/M820.77096
4-3/M82N/AN/A
5-3/M820.911720.49
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.96099
7-2/M821.07668
9-3-2/M820.91430.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.081960.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.067911
IL12-4/WTpooled0.950721
IL1-4/WTpooled1.04314
WT/WTpooled1.010681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.977161

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.914550.849
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.151491
DC3000/delta hrp 24h0.698580.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.847630.035
DC3000 delta B/DC3000 delta AB0.863320.106

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.959421
Var 0h1.122220.421
Var 12h I row2-row10.904920.39
Var 12h NI row2-row10.954530.713
Var 36h I row2-row11.130891
Var 36h NI row2-row11.1541
Var 60h I row2-row11.24470.562
Var 60h NI row2-row11.008541
Time course 0hI-0hNI1.002551
Time course 12hI-12hNI0.972180.698
Time course 36hI-36hNI0.918890.175
Time course 60hI-60hNI0.434560.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.781270.49
transgenic ySAMdc/azygous control (red)0.922251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.951120.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.975740.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.050211
Manapal/WT (red)N/AN/A