Expression of 1-1-1.3.16.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06884 | 0.904 |
27DAP/17DAP | 0.93102 | 0.876 |
39DAP/27DAP | 1.13961 | 0.885 |
41DAP/39DAP | 1.18529 | 0.553 |
42DAP/41DAP | 0.96486 | 1 |
43DAP/42DAP | 0.96426 | 0.877 |
47DAP/43DAP | 1.04925 | 0.842 |
52DAP/47DAP | 1.13084 | 0.851 |
57DAP/52DAP | 1.03144 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3455 | 0.071 |
17DAP/reference | 1.41572 | 0.021 |
27DAP/reference | 1.03211 | 1 |
39DAP/reference | 1.37329 | 0.025 |
41DAP/reference | 1.84694 | 0.014 |
42DAP/reference | 1.21479 | 0.007 |
43DAP/reference | 1.07591 | 0.812 |
47DAP/reference | 1.16107 | 0.024 |
52DAP/reference | 0.93968 | 0.23 |
57DAP/reference | 0.80372 | 0.029 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 1.04713 | 0.863 |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | 0.9031 | 0.055 |
42DAP/41DAP | 1.05487 | 0.727 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 1.04131 | 0.827 |
52DAP/47DAP | 1.0253 | |
57DAP/52DAP | 1.01612 | 0.984 |
57DAP/7DAP | 0.97477 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08185 | |
17DAP/reference | 0.91128 | 0.049 |
27DAP/reference | 0.88773 | 0.012 |
39DAP/reference | 0.96885 | 0.23 |
41DAP/reference | 1.04931 | 0.655 |
42DAP/reference | 1.03153 | 0.076 |
43DAP/reference | 1.01528 | 0.873 |
47DAP/reference | 0.93571 | 0.383 |
52DAP/reference | 0.95117 | 0.061 |
57DAP/reference | 0.94766 | 0.101 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42494 | 0.319 |
17DAP/reference | 1.65786 | 0.278 |
27DAP/reference | 1.27561 | 0.254 |
39DAP/reference | 1.04683 | 1 |
41DAP/reference | 1.27965 | 0.031 |
42DAP/reference | 1.28936 | 0.013 |
43DAP/reference | 1.34335 | 0.199 |
47DAP/reference | 1.45142 | 0.013 |
52DAP/reference | 1.17989 | 0.259 |
57DAP/reference | 1.5676 | 0.012 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36643 | 0.545 |
17DAP/reference | 1.11847 | 0.631 |
27DAP/reference | 1.0071 | 0.843 |
39DAP/reference | 1.09186 | 0.578 |
41DAP/reference | 0.99704 | 0.826 |
42DAP/reference | 0.94234 | 0.445 |
43DAP/reference | 1.08996 | 0.867 |
47DAP/reference | 1.1514 | 0.324 |
52DAP/reference | 0.96468 | 0.65 |
57DAP/reference | 0.792 | 0.057 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.57929 | 0.305 |
26DAP/20DAP | 0.92213 | 0.183 |
34DAP/26DAP | 1.00063 | 1 |
51DAP/34DAP | 0.97956 | 0.807 |
52DAP/51DAP | 1.00875 | 0.925 |
53DAP/52DAP | 0.76918 | |
55DAP/53DAP | 0.96101 | |
57DAP/55DAP | 1.22729 | 0.559 |
62DAP/57DAP | 1.10855 | 1 |
68DAP/62DAP | 0.66066 | 0.345 |
68DAP/14DAP | 0.52394 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92562 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.06262 | 0.69 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.88798 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.04318 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.45965 | |
3-2/M82 | 0.93892 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.66423 | 0.737 |
4-3-2/M82 | 0.77096 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.91172 | 0.49 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.96099 | |
7-2/M82 | 1.07668 | |
9-3-2/M82 | 0.9143 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.08196 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06791 | 1 |
IL12-4/WTpooled | 0.95072 | 1 |
IL1-4/WTpooled | 1.04314 | |
WT/WTpooled | 1.01068 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97716 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91455 | 0.849 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.15149 | 1 |
DC3000/delta hrp 24h | 0.69858 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.84763 | 0.035 |
DC3000 delta B/DC3000 delta AB | 0.86332 | 0.106 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95942 | 1 |
Var 0h | 1.12222 | 0.421 |
Var 12h I row2-row1 | 0.90492 | 0.39 |
Var 12h NI row2-row1 | 0.95453 | 0.713 |
Var 36h I row2-row1 | 1.13089 | 1 |
Var 36h NI row2-row1 | 1.154 | 1 |
Var 60h I row2-row1 | 1.2447 | 0.562 |
Var 60h NI row2-row1 | 1.00854 | 1 |
Time course 0hI-0hNI | 1.00255 | 1 |
Time course 12hI-12hNI | 0.97218 | 0.698 |
Time course 36hI-36hNI | 0.91889 | 0.175 |
Time course 60hI-60hNI | 0.43456 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.78127 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.92225 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95112 | 0.353 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97574 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.05021 | 1 |
Manapal/WT (red) | N/A | N/A |
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