Expression of 1-1-1.3.17.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.331680.512
27DAP/17DAP1.17990.833
39DAP/27DAP1.02570.84
41DAP/39DAP1.075840.772
42DAP/41DAP1.149640.898
43DAP/42DAP1.087681
47DAP/43DAP1.180110.776
52DAP/47DAP0.851370.572
57DAP/52DAP0.974320.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.127690.567
17DAP/reference0.900070.12
27DAP/reference1.066780.487
39DAP/reference0.737930.164
41DAP/reference0.76180.016
42DAP/reference1.273790.352
43DAP/reference0.924760.247
47DAP/reference1.26220.593
52DAP/reference1.624830.041
57DAP/reference1.794330.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.026791
27DAP/17DAP0.93080.508
39DAP/27DAP0.927010.45
41DAP/39DAP1.096650.663
42DAP/41DAP0.935280.56
43DAP/42DAP1.075810.134
47DAP/43DAP1.163080.471
52DAP/47DAP1.109440.624
57DAP/52DAP1.366410.161
57DAP/7DAP1.055291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893990.07
17DAP/reference0.98980.389
27DAP/reference0.967260.248
39DAP/reference0.959160.027
41DAP/reference0.944650.098
42DAP/reference0.904690.014
43DAP/reference0.967260.334
47DAP/reference1.092980.504
52DAP/reference0.917780.15
57DAP/reference0.906740.074

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.716590.022
17DAP/reference0.657870.012
27DAP/reference0.922550.317
39DAP/reference1.226850.119
41DAP/reference1.454730.008
42DAP/reference1.372080.042
43DAP/reference0.741820.105
47DAP/reference0.997970.678
52DAP/reference1.042691
57DAP/reference0.757210.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975040.335
17DAP/reference0.981120.727
27DAP/reference0.938350.195
39DAP/reference0.918860.076
41DAP/reference0.973550.148
42DAP/reference1.110780.701
43DAP/reference1.287280.194
47DAP/reference1.033070.731
52DAP/reference0.910720.351
57DAP/reference1.826170.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02011
26DAP/20DAP1.298690.253
34DAP/26DAP0.998551
51DAP/34DAP0.703180.09
52DAP/51DAP1.130580.534
53DAP/52DAP0.923630.435
55DAP/53DAP1.084270.634
57DAP/55DAP0.940390.718
62DAP/57DAP1.222530.868
68DAP/62DAP4.987170.036
68DAP/14DAP4.0070.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.189220.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.256090.299
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.92411
12-2/M82N/AN/A
12-4/M820.68543
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.97255
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.90083

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.913691
IL2-6/WTpooled1.093410.788
IL7-5/WTpooled0.46334
IL7-3/WTpooled0.829950.298
IL12-4/WTpooled1.119430.839
IL1-4/WTpooled1.09972
WT/WTpooled1.070071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.829050.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.876541
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.78181
DC3000/delta hrp 24h0.786380.067

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.678110.024
DC3000 delta B/DC3000 delta AB0.611310.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980211
Var 0h1.031710.98
Var 12h I row2-row10.792330.328
Var 12h NI row2-row10.993461
Var 36h I row2-row10.865841
Var 36h NI row2-row11.733411
Var 60h I row2-row10.909260.832
Var 60h NI row2-row10.907661
Time course 0hI-0hNI0.994221
Time course 12hI-12hNI0.991260.991
Time course 36hI-36hNI0.864290.096
Time course 60hI-60hNI0.327590.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.134590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.935680.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.016411
Manapal/WT (red)N/AN/A