Expression of 1-1-1.3.17.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33168 | 0.512 |
27DAP/17DAP | 1.1799 | 0.833 |
39DAP/27DAP | 1.0257 | 0.84 |
41DAP/39DAP | 1.07584 | 0.772 |
42DAP/41DAP | 1.14964 | 0.898 |
43DAP/42DAP | 1.08768 | 1 |
47DAP/43DAP | 1.18011 | 0.776 |
52DAP/47DAP | 0.85137 | 0.572 |
57DAP/52DAP | 0.97432 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12769 | 0.567 |
17DAP/reference | 0.90007 | 0.12 |
27DAP/reference | 1.06678 | 0.487 |
39DAP/reference | 0.73793 | 0.164 |
41DAP/reference | 0.7618 | 0.016 |
42DAP/reference | 1.27379 | 0.352 |
43DAP/reference | 0.92476 | 0.247 |
47DAP/reference | 1.2622 | 0.593 |
52DAP/reference | 1.62483 | 0.041 |
57DAP/reference | 1.79433 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02679 | 1 |
27DAP/17DAP | 0.9308 | 0.508 |
39DAP/27DAP | 0.92701 | 0.45 |
41DAP/39DAP | 1.09665 | 0.663 |
42DAP/41DAP | 0.93528 | 0.56 |
43DAP/42DAP | 1.07581 | 0.134 |
47DAP/43DAP | 1.16308 | 0.471 |
52DAP/47DAP | 1.10944 | 0.624 |
57DAP/52DAP | 1.36641 | 0.161 |
57DAP/7DAP | 1.05529 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89399 | 0.07 |
17DAP/reference | 0.9898 | 0.389 |
27DAP/reference | 0.96726 | 0.248 |
39DAP/reference | 0.95916 | 0.027 |
41DAP/reference | 0.94465 | 0.098 |
42DAP/reference | 0.90469 | 0.014 |
43DAP/reference | 0.96726 | 0.334 |
47DAP/reference | 1.09298 | 0.504 |
52DAP/reference | 0.91778 | 0.15 |
57DAP/reference | 0.90674 | 0.074 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71659 | 0.022 |
17DAP/reference | 0.65787 | 0.012 |
27DAP/reference | 0.92255 | 0.317 |
39DAP/reference | 1.22685 | 0.119 |
41DAP/reference | 1.45473 | 0.008 |
42DAP/reference | 1.37208 | 0.042 |
43DAP/reference | 0.74182 | 0.105 |
47DAP/reference | 0.99797 | 0.678 |
52DAP/reference | 1.04269 | 1 |
57DAP/reference | 0.75721 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97504 | 0.335 |
17DAP/reference | 0.98112 | 0.727 |
27DAP/reference | 0.93835 | 0.195 |
39DAP/reference | 0.91886 | 0.076 |
41DAP/reference | 0.97355 | 0.148 |
42DAP/reference | 1.11078 | 0.701 |
43DAP/reference | 1.28728 | 0.194 |
47DAP/reference | 1.03307 | 0.731 |
52DAP/reference | 0.91072 | 0.351 |
57DAP/reference | 1.82617 | 0.014 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02011 | |
26DAP/20DAP | 1.29869 | 0.253 |
34DAP/26DAP | 0.99855 | 1 |
51DAP/34DAP | 0.70318 | 0.09 |
52DAP/51DAP | 1.13058 | 0.534 |
53DAP/52DAP | 0.92363 | 0.435 |
55DAP/53DAP | 1.08427 | 0.634 |
57DAP/55DAP | 0.94039 | 0.718 |
62DAP/57DAP | 1.22253 | 0.868 |
68DAP/62DAP | 4.98717 | 0.036 |
68DAP/14DAP | 4.007 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18922 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.25609 | 0.299 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.92411 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.68543 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.97255 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.90083 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91369 | 1 |
IL2-6/WTpooled | 1.09341 | 0.788 |
IL7-5/WTpooled | 0.46334 | |
IL7-3/WTpooled | 0.82995 | 0.298 |
IL12-4/WTpooled | 1.11943 | 0.839 |
IL1-4/WTpooled | 1.09972 | |
WT/WTpooled | 1.07007 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82905 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87654 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.7818 | 1 |
DC3000/delta hrp 24h | 0.78638 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.67811 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.61131 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98021 | 1 |
Var 0h | 1.03171 | 0.98 |
Var 12h I row2-row1 | 0.79233 | 0.328 |
Var 12h NI row2-row1 | 0.99346 | 1 |
Var 36h I row2-row1 | 0.86584 | 1 |
Var 36h NI row2-row1 | 1.73341 | 1 |
Var 60h I row2-row1 | 0.90926 | 0.832 |
Var 60h NI row2-row1 | 0.90766 | 1 |
Time course 0hI-0hNI | 0.99422 | 1 |
Time course 12hI-12hNI | 0.99126 | 0.991 |
Time course 36hI-36hNI | 0.86429 | 0.096 |
Time course 60hI-60hNI | 0.32759 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.13459 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93568 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.01641 | 1 |
Manapal/WT (red) | N/A | N/A |
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