TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-1.3.17.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.83670.265
27DAP/17DAP0.800880.397
39DAP/27DAP1.547330.147
41DAP/39DAP0.844120.412
42DAP/41DAP1.088280.971
43DAP/42DAP1.004210.937
47DAP/43DAP0.835980.499
52DAP/47DAP1.156350.844
57DAP/52DAP1.159590.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.19940.075
17DAP/reference0.94720.278
27DAP/reference0.909210.134
39DAP/reference0.928740.292
41DAP/reference0.930140.065
42DAP/reference1.138220.005
43DAP/reference1.009630.982
47DAP/reference1.114230.039
52DAP/reference1.044270.84
57DAP/reference1.236270.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.870660.112
27DAP/17DAP0.980860.887
39DAP/27DAP0.98410.953
41DAP/39DAP1.10280.719
42DAP/41DAP1.039340.935
43DAP/42DAP0.868460.105
47DAP/43DAP1.090360.182
52DAP/47DAP0.931630.66
57DAP/52DAP0.931290.43
57DAP/7DAP0.640371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234590.056
17DAP/reference1.177620.016
27DAP/reference1.216860.006
39DAP/reference1.112020.016
41DAP/reference1.051770.314
42DAP/reference1.075380.1
43DAP/reference1.078880.148
47DAP/reference1.194330.034
52DAP/reference1.162660.008
57DAP/reference1.152490.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234980.037
17DAP/reference1.147070.197
27DAP/reference1.163930.156
39DAP/reference1.166520.041
41DAP/reference1.079530.599
42DAP/reference1.011261
43DAP/reference1.01460.91
47DAP/reference1.047560.498
52DAP/reference0.988920.576
57DAP/reference0.918690.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.256080.025
17DAP/reference0.99640.839
27DAP/reference1.053190.357
39DAP/reference1.097880.037
41DAP/reference1.068240.306
42DAP/reference1.208520.074
43DAP/reference1.392840.092
47DAP/reference1.063390.294
52DAP/reference1.193220.318
57DAP/reference1.665980.037

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.898521
26DAP/20DAP1.387840.141
34DAP/26DAP0.965180.945
51DAP/34DAP0.998070.937
52DAP/51DAP0.888151
53DAP/52DAP1.032510.91
55DAP/53DAP1.060340.976
57DAP/55DAP1.227640.51
62DAP/57DAP1.045070.868
68DAP/62DAP1.17130.31
68DAP/14DAP1.410170.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.861690.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.969730.726
Mature Green Tomato/Ripe Tomato1.590480.077
Immature Eggplant/Mature Eggplant0.975430.808
Ripe Pepper/Ripe Tomato1.37221
Mature Eggplant/Ripe Tomato0.733991

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.013811
1-1-2/M821.035361
12-2/M821.121411
12-4/M821.082451
1-3/M820.990731
2-1-1/M821.049560.764
2-1/M820.808740.345
2-6/M821.028670.452
3-2/M821.004211
4-1-1/M821.230051
4-1/M821.346350.853
4-3-2/M821.564131
4-3/M821.148761
5-3/M821.082490.496
6-2/M820.941311
6-3/M821.064251
7-1/M821.013861
7-2/M821.044121
9-3-2/M821.27871

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.97076N/A
IL2-6/WTpooled1.17218N/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.24261
IL12-4/WTpooled0.891571
IL1-4/WTpooled0.911450.699
WT/WTpooled0.955061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.25620.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h11
DC3000/delta hrp 6h0.889550.95
DC3000/delta hrp 12h1.025831
DC3000/delta hrp 24h1.083520.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.111830.102
DC3000 delta B/DC3000 delta AB1.130490.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.842991
Exp 36h1.314071
Exp 60h1.104671

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972941
Var 0h0.748120.206
Var 12h I row2-row10.977250.948
Var 12h NI row2-row11.330050.649
Var 36h I row2-row10.924611
Var 36h NI row2-row10.9760.791
Var 60h I row2-row10.961610.582
Var 60h NI row2-row10.870940.292
Time course 0hI-0hNI0.91420.306
Time course 12hI-12hNI1.016590.82
Time course 36hI-36hNI1.354930.023
Time course 60hI-60hNI1.570870.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.949790.567
transgenic ySAMdc/azygous control (breaker)1.962530.178
transgenic ySAMdc/azygous control (red)1.351010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.942530.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.758530.172
Manapal/WT (break)0.980471
Manapal/WT (red)0.890950.36