Expression of 1-1-1.3.18.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0077 | 0.876 |
27DAP/17DAP | 1.20114 | 0.819 |
39DAP/27DAP | 1.03123 | 0.798 |
41DAP/39DAP | 1.38189 | 0.584 |
42DAP/41DAP | 1.15165 | 0.933 |
43DAP/42DAP | 0.99682 | 0.937 |
47DAP/43DAP | 1.12209 | 0.746 |
52DAP/47DAP | 1.1267 | 0.847 |
57DAP/52DAP | 1.14225 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07734 | 0.403 |
17DAP/reference | 0.99236 | 0.819 |
27DAP/reference | 0.92318 | 0.314 |
39DAP/reference | 1.03328 | 0.691 |
41DAP/reference | 1.09482 | 0.058 |
42DAP/reference | 1.14467 | 0.009 |
43DAP/reference | 0.98141 | 0.728 |
47DAP/reference | 1.10985 | 0.071 |
52DAP/reference | 1.11881 | 0.167 |
57DAP/reference | 0.93516 | 0.248 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97218 | 0.679 |
27DAP/17DAP | 1.01836 | 0.954 |
39DAP/27DAP | 1.01941 | 0.811 |
41DAP/39DAP | 1.01694 | 0.895 |
42DAP/41DAP | 1.07391 | 0.487 |
43DAP/42DAP | 0.99619 | 1 |
47DAP/43DAP | 0.98595 | 0.923 |
52DAP/47DAP | 0.98706 | 0.93 |
57DAP/52DAP | 0.954 | 0.572 |
57DAP/7DAP | 0.94795 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98101 | 0.183 |
17DAP/reference | 0.96317 | 0.192 |
27DAP/reference | 1.07965 | 0.073 |
39DAP/reference | 0.97508 | 0.264 |
41DAP/reference | 1.02116 | 0.745 |
42DAP/reference | 1.07327 | 0.076 |
43DAP/reference | 0.98401 | 0.421 |
47DAP/reference | 0.91851 | 0.101 |
52DAP/reference | 0.96024 | 0.106 |
57DAP/reference | 1.00838 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19015 | 0.213 |
17DAP/reference | 1.25882 | 0.026 |
27DAP/reference | 1.3374 | 0.044 |
39DAP/reference | 1.2284 | 0.085 |
41DAP/reference | 1.20599 | 0.406 |
42DAP/reference | 1.23967 | 0.094 |
43DAP/reference | 1.32561 | 0.014 |
47DAP/reference | 1.2295 | 0.029 |
52DAP/reference | 1.24398 | 0.006 |
57DAP/reference | 1.31819 | 0.009 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92999 | 0.055 |
17DAP/reference | 1.08111 | 0.665 |
27DAP/reference | 1.01847 | 1 |
39DAP/reference | 0.93184 | 0.063 |
41DAP/reference | 1.05836 | 0.637 |
42DAP/reference | 1.33444 | 0.199 |
43DAP/reference | 1.18204 | 0.264 |
47DAP/reference | 1.04003 | 0.934 |
52DAP/reference | 1.02665 | 0.862 |
57DAP/reference | 1.37896 | 0.037 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95409 | 1 |
26DAP/20DAP | 0.94928 | 0.512 |
34DAP/26DAP | 0.91844 | 0.712 |
51DAP/34DAP | 0.95256 | 0.714 |
52DAP/51DAP | 1.07325 | 0.542 |
53DAP/52DAP | 1.11045 | 0.458 |
55DAP/53DAP | 1.00267 | 0.925 |
57DAP/55DAP | 0.88902 | 0.433 |
62DAP/57DAP | 1.13753 | 0.833 |
68DAP/62DAP | 0.98914 | 0.834 |
68DAP/14DAP | 0.90789 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05156 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.08498 | 0.046 |
Mature Green Tomato/Ripe Tomato | 0.64202 | 0.047 |
Immature Eggplant/Mature Eggplant | 10.7376 | 0.05 |
Ripe Pepper/Ripe Tomato | 6.788 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.48642 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.15969 | 0.574 |
1-1-2/M82 | 1.04022 | 1 |
12-2/M82 | 1.11835 | 1 |
12-4/M82 | 0.89125 | 1 |
1-3/M82 | 1.25278 | 0.479 |
2-1-1/M82 | 1.09242 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.17216 | 0.695 |
3-2/M82 | 1.08644 | |
4-1-1/M82 | 1.13028 | |
4-1/M82 | 1.16747 | |
4-3-2/M82 | 1.06162 | |
4-3/M82 | 1.03423 | 1 |
5-3/M82 | 0.9616 | 1 |
6-2/M82 | 1.22536 | 1 |
6-3/M82 | 0.94869 | 1 |
7-1/M82 | 1.11115 | |
7-2/M82 | 1.65709 | 0.385 |
9-3-2/M82 | 1.88088 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.63431 | 0.243 |
IL2-6/WTpooled | 1.03172 | 0.788 |
IL7-5/WTpooled | 1.37186 | 1 |
IL7-3/WTpooled | 1.11407 | 1 |
IL12-4/WTpooled | 1.41214 | 0.516 |
IL1-4/WTpooled | 0.82225 | 0.457 |
WT/WTpooled | 1.03833 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.41395 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01849 | 0.921 |
DC3000/delta hrp 6h | 0.9161 | 0.95 |
DC3000/delta hrp 12h | 1.05724 | 1 |
DC3000/delta hrp 24h | 1.02094 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14532 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.08407 | 0.398 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09074 | 1 |
Exp 36h | 1.56772 | 0.693 |
Exp 60h | 1.41726 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98727 | 1 |
Var 0h | 1.03663 | 1 |
Var 12h I row2-row1 | 0.96988 | 0.948 |
Var 12h NI row2-row1 | 1.16496 | 0.649 |
Var 36h I row2-row1 | 0.97178 | 1 |
Var 36h NI row2-row1 | 0.89109 | 0.706 |
Var 60h I row2-row1 | 0.73139 | 0.285 |
Var 60h NI row2-row1 | 0.88672 | 0.318 |
Time course 0hI-0hNI | 1.07832 | 0.486 |
Time course 12hI-12hNI | 1.05506 | 0.762 |
Time course 36hI-36hNI | 1.64215 | 0.006 |
Time course 60hI-60hNI | 6.49435 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86355 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 0.43 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.1161 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00505 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.62327 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.17465 | 0.096 |
Manapal/WT (break) | 3.81904 | 0.381 |
Manapal/WT (red) | 6.50884 | 0.142 |
|
|