Expression of 1-1-1.3.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00770.876
27DAP/17DAP1.201140.819
39DAP/27DAP1.031230.798
41DAP/39DAP1.381890.584
42DAP/41DAP1.151650.933
43DAP/42DAP0.996820.937
47DAP/43DAP1.122090.746
52DAP/47DAP1.12670.847
57DAP/52DAP1.142250.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.077340.403
17DAP/reference0.992360.819
27DAP/reference0.923180.314
39DAP/reference1.033280.691
41DAP/reference1.094820.058
42DAP/reference1.144670.009
43DAP/reference0.981410.728
47DAP/reference1.109850.071
52DAP/reference1.118810.167
57DAP/reference0.935160.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972180.679
27DAP/17DAP1.018360.954
39DAP/27DAP1.019410.811
41DAP/39DAP1.016940.895
42DAP/41DAP1.073910.487
43DAP/42DAP0.996191
47DAP/43DAP0.985950.923
52DAP/47DAP0.987060.93
57DAP/52DAP0.9540.572
57DAP/7DAP0.947951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981010.183
17DAP/reference0.963170.192
27DAP/reference1.079650.073
39DAP/reference0.975080.264
41DAP/reference1.021160.745
42DAP/reference1.073270.076
43DAP/reference0.984010.421
47DAP/reference0.918510.101
52DAP/reference0.960240.106
57DAP/reference1.008381

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.190150.213
17DAP/reference1.258820.026
27DAP/reference1.33740.044
39DAP/reference1.22840.085
41DAP/reference1.205990.406
42DAP/reference1.239670.094
43DAP/reference1.325610.014
47DAP/reference1.22950.029
52DAP/reference1.243980.006
57DAP/reference1.318190.009

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.929990.055
17DAP/reference1.081110.665
27DAP/reference1.018471
39DAP/reference0.931840.063
41DAP/reference1.058360.637
42DAP/reference1.334440.199
43DAP/reference1.182040.264
47DAP/reference1.040030.934
52DAP/reference1.026650.862
57DAP/reference1.378960.037

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.954091
26DAP/20DAP0.949280.512
34DAP/26DAP0.918440.712
51DAP/34DAP0.952560.714
52DAP/51DAP1.073250.542
53DAP/52DAP1.110450.458
55DAP/53DAP1.002670.925
57DAP/55DAP0.889020.433
62DAP/57DAP1.137530.833
68DAP/62DAP0.989140.834
68DAP/14DAP0.907891

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.051560.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.084980.046
Mature Green Tomato/Ripe Tomato0.642020.047
Immature Eggplant/Mature Eggplant10.73760.05
Ripe Pepper/Ripe Tomato6.7880.258
Mature Eggplant/Ripe Tomato1.486421

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.159690.574
1-1-2/M821.040221
12-2/M821.118351
12-4/M820.891251
1-3/M821.252780.479
2-1-1/M821.092420.689
2-1/M82N/AN/A
2-6/M821.172160.695
3-2/M821.08644
4-1-1/M821.13028
4-1/M821.16747
4-3-2/M821.06162
4-3/M821.034231
5-3/M820.96161
6-2/M821.225361
6-3/M820.948691
7-1/M821.11115
7-2/M821.657090.385
9-3-2/M821.880881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.634310.243
IL2-6/WTpooled1.031720.788
IL7-5/WTpooled1.371861
IL7-3/WTpooled1.114071
IL12-4/WTpooled1.412140.516
IL1-4/WTpooled0.822250.457
WT/WTpooled1.038331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.413950.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018490.921
DC3000/delta hrp 6h0.91610.95
DC3000/delta hrp 12h1.057241
DC3000/delta hrp 24h1.020940.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.145320.057
DC3000 delta B/DC3000 delta AB1.084070.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.090741
Exp 36h1.567720.693
Exp 60h1.417260.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987271
Var 0h1.036631
Var 12h I row2-row10.969880.948
Var 12h NI row2-row11.164960.649
Var 36h I row2-row10.971781
Var 36h NI row2-row10.891090.706
Var 60h I row2-row10.731390.285
Var 60h NI row2-row10.886720.318
Time course 0hI-0hNI1.078320.486
Time course 12hI-12hNI1.055060.762
Time course 36hI-36hNI1.642150.006
Time course 60hI-60hNI6.494350.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.863550.409
transgenic ySAMdc/azygous control (breaker)0.430.15
transgenic ySAMdc/azygous control (red)1.11611

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.005050.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.623270.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.174650.096
Manapal/WT (break)3.819040.381
Manapal/WT (red)6.508840.142