Expression of 1-1-1.3.19.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.145480.755
27DAP/17DAP0.839330.615
39DAP/27DAP1.682750.217
41DAP/39DAP1.033090.921
42DAP/41DAP0.925271
43DAP/42DAP1.063081
47DAP/43DAP1.03380.966
52DAP/47DAP0.971430.873
57DAP/52DAP1.013280.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.302570.021
17DAP/reference1.304770.016
27DAP/reference1.188570.031
39DAP/reference1.358620.368
41DAP/reference1.412990.012
42DAP/reference1.221380.485
43DAP/reference0.946870.763
47DAP/reference1.295730.001
52DAP/reference1.16370.195
57DAP/reference1.74119

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.063681
27DAP/17DAP1.144690.69
39DAP/27DAP1.009031
41DAP/39DAP1.178610.266
42DAP/41DAP1.068550.893
43DAP/42DAP0.740960.022
47DAP/43DAP1.075970.618
52DAP/47DAP1.001120.962
57DAP/52DAP1.041040.864
57DAP/7DAP0.610951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944210.402
17DAP/reference0.920380.295
27DAP/reference1.120370.453
39DAP/reference1.352180.056
41DAP/reference1.222090.26
42DAP/reference1.161690.132
43DAP/reference1.177730.105
47DAP/reference0.942230.504
52DAP/reference1.037381
57DAP/reference0.958480.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.16660.119
17DAP/reference1.214870.131
27DAP/reference1.186560.188
39DAP/reference1.077390.529
41DAP/reference1.122290.188
42DAP/reference1.140350.148
43DAP/reference1.213750.159
47DAP/reference1.169940.009
52DAP/reference1.212810.135
57DAP/reference1.427690.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056850.793
17DAP/reference1.035970.956
27DAP/reference0.874510.039
39DAP/reference0.969820.504
41DAP/reference0.903910.148
42DAP/reference1.102080.356
43DAP/reference1.004770.767
47DAP/reference1.074180.562
52DAP/reference1.101790.483
57DAP/reference1.00320.801

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.47399
26DAP/20DAP0.841311
34DAP/26DAP1.423471
51DAP/34DAP1.061830.978
52DAP/51DAP0.939621
53DAP/52DAP0.753430.107
55DAP/53DAP0.613840.048
57DAP/55DAP1.108010.935
62DAP/57DAP1.044071
68DAP/62DAP0.885820.579
68DAP/14DAP0.816751

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.004970.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.336390.015
Immature Eggplant/Mature Eggplant4.09947
Ripe Pepper/Ripe Tomato0.595380.293
Mature Eggplant/Ripe Tomato0.844371

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.60835
1-1-2/M821.189151
12-2/M82N/AN/A
12-4/M820.866910.619
1-3/M821.23049
2-1-1/M820.96904
2-1/M82N/AN/A
2-6/M821.11637
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.74495
4-3-2/M82N/AN/A
4-3/M821.17252
5-3/M820.835111
6-2/M821.26954
6-3/M820.782641
7-1/M82N/AN/A
7-2/M821.270550.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.613230.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.400820.362
IL12-4/WTpooled1.331360.532
IL1-4/WTpooled0.84950.562
WT/WTpooled1.022831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.939541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069180.921
DC3000/delta hrp 6h0.878110.95
DC3000/delta hrp 12h1.136181
DC3000/delta hrp 24h0.772950.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.908610.413
DC3000 delta B/DC3000 delta AB0.896650.369

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.004331
Exp 36h1.358321
Exp 60h1.345130.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988131
Var 0h0.868830.339
Var 12h I row2-row10.877760.338
Var 12h NI row2-row10.996981
Var 36h I row2-row11.304780.908
Var 36h NI row2-row11.138131
Var 60h I row2-row10.830360.832
Var 60h NI row2-row11.044261
Time course 0hI-0hNI0.947280.699
Time course 12hI-12hNI1.014340.849
Time course 36hI-36hNI0.939630.198
Time course 60hI-60hNI0.426450.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.989170.862
transgenic ySAMdc/azygous control (breaker)0.873920.49
transgenic ySAMdc/azygous control (red)1.073520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.992440.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.099730.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.078890.863