Expression of 1-1-1.3.19.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02274 | 0.858 |
27DAP/17DAP | 1.43662 | 0.708 |
39DAP/27DAP | 0.8445 | 0.069 |
41DAP/39DAP | 0.84062 | 0.533 |
42DAP/41DAP | 1.01321 | 1 |
43DAP/42DAP | 1.06411 | 1 |
47DAP/43DAP | 1.13369 | 0.825 |
52DAP/47DAP | 1.18878 | 0.767 |
57DAP/52DAP | 0.95615 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98367 | 0.589 |
17DAP/reference | 0.73538 | 0.018 |
27DAP/reference | 1.04069 | 1 |
39DAP/reference | 0.76572 | 0.029 |
41DAP/reference | 0.64905 | 0.008 |
42DAP/reference | 0.87221 | 0.056 |
43DAP/reference | 0.98673 | 0.785 |
47DAP/reference | 1.09059 | 1 |
52DAP/reference | 1.34041 | 0.045 |
57DAP/reference | 1.48413 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06537 | 0.841 |
27DAP/17DAP | 1.03008 | 1 |
39DAP/27DAP | 1.20265 | 0.57 |
41DAP/39DAP | 1.16998 | 0.801 |
42DAP/41DAP | 0.93076 | 0.568 |
43DAP/42DAP | 1.04895 | 0.991 |
47DAP/43DAP | 1.05625 | 0.957 |
52DAP/47DAP | 1.85231 | 0.19 |
57DAP/52DAP | 0.98128 | 0.763 |
57DAP/7DAP | 1.44529 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7987 | 0.086 |
17DAP/reference | 0.94959 | 0.338 |
27DAP/reference | 1.11736 | 0.246 |
39DAP/reference | 0.78416 | 0.043 |
41DAP/reference | 0.84841 | 0.194 |
42DAP/reference | 0.96817 | 0.482 |
43DAP/reference | 0.96845 | 0.44 |
47DAP/reference | 0.89291 | 0.168 |
52DAP/reference | 0.90845 | 0.278 |
57DAP/reference | 1.13074 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67252 | 0.037 |
17DAP/reference | 0.6109 | 0.004 |
27DAP/reference | 0.94296 | 0.381 |
39DAP/reference | 0.9712 | 0.455 |
41DAP/reference | 1.08342 | 0.705 |
42DAP/reference | 0.95313 | 0.289 |
43DAP/reference | 0.85506 | 0.206 |
47DAP/reference | 0.82468 | 0.02 |
52DAP/reference | 0.74451 | 0.004 |
57DAP/reference | 0.53168 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88068 | 0.127 |
17DAP/reference | 0.88087 | 0.322 |
27DAP/reference | 0.87967 | 0.069 |
39DAP/reference | 0.94672 | 0.36 |
41DAP/reference | 0.98124 | 0.56 |
42DAP/reference | 1.29779 | 0.4 |
43DAP/reference | 1.16921 | 0.634 |
47DAP/reference | 0.97072 | 0.465 |
52DAP/reference | 1.15149 | 0.888 |
57DAP/reference | 1.95221 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17895 | 0.966 |
26DAP/20DAP | 0.93634 | 1 |
34DAP/26DAP | 0.88207 | 0.94 |
51DAP/34DAP | 0.81319 | 0.546 |
52DAP/51DAP | 0.94861 | 1 |
53DAP/52DAP | 1.28081 | 0.662 |
55DAP/53DAP | 1.12708 | 0.989 |
57DAP/55DAP | 0.68067 | 0.068 |
62DAP/57DAP | 1.29554 | 0.217 |
68DAP/62DAP | 3.08082 | 0.017 |
68DAP/14DAP | 3.25673 | 0.023 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60165 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 3.58145 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.17525 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.0976 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.84813 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.39799 | 0.277 |
IL2-6/WTpooled | 0.99628 | 1 |
IL7-5/WTpooled | 1.47992 | |
IL7-3/WTpooled | 1.10621 | 1 |
IL12-4/WTpooled | 1.03358 | 1 |
IL1-4/WTpooled | 1.46066 | |
WT/WTpooled | 1.12722 | 0.87 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90067 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97389 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.08097 | 1 |
DC3000/delta hrp 24h | 0.96144 | 0.794 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.69444 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0637 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.84271 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.2625 | 1 |
Var 0h | 1.98167 | 0.98 |
Var 12h I row2-row1 | 1.10328 | 0.473 |
Var 12h NI row2-row1 | 0.61207 | 0.713 |
Var 36h I row2-row1 | 1.27505 | 1 |
Var 36h NI row2-row1 | 0.68244 | 1 |
Var 60h I row2-row1 | 0.9155 | 0.582 |
Var 60h NI row2-row1 | 0.80199 | 1 |
Time course 0hI-0hNI | 1.05222 | 0.852 |
Time course 12hI-12hNI | 1.00918 | 0.888 |
Time course 36hI-36hNI | 1.2195 | 0.114 |
Time course 60hI-60hNI | 1.33864 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18151 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.75414 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.05493 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03399 | 0.495 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09788 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14368 | 0.14 |
Manapal/WT (break) | 1.08085 | 1 |
Manapal/WT (red) | 1.28232 | 0.164 |
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