Expression of 1-1-1.3.19.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.022740.858
27DAP/17DAP1.436620.708
39DAP/27DAP0.84450.069
41DAP/39DAP0.840620.533
42DAP/41DAP1.013211
43DAP/42DAP1.064111
47DAP/43DAP1.133690.825
52DAP/47DAP1.188780.767
57DAP/52DAP0.956150.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.983670.589
17DAP/reference0.735380.018
27DAP/reference1.040691
39DAP/reference0.765720.029
41DAP/reference0.649050.008
42DAP/reference0.872210.056
43DAP/reference0.986730.785
47DAP/reference1.090591
52DAP/reference1.340410.045
57DAP/reference1.484130.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.065370.841
27DAP/17DAP1.030081
39DAP/27DAP1.202650.57
41DAP/39DAP1.169980.801
42DAP/41DAP0.930760.568
43DAP/42DAP1.048950.991
47DAP/43DAP1.056250.957
52DAP/47DAP1.852310.19
57DAP/52DAP0.981280.763
57DAP/7DAP1.445291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.79870.086
17DAP/reference0.949590.338
27DAP/reference1.117360.246
39DAP/reference0.784160.043
41DAP/reference0.848410.194
42DAP/reference0.968170.482
43DAP/reference0.968450.44
47DAP/reference0.892910.168
52DAP/reference0.908450.278
57DAP/reference1.130740.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.672520.037
17DAP/reference0.61090.004
27DAP/reference0.942960.381
39DAP/reference0.97120.455
41DAP/reference1.083420.705
42DAP/reference0.953130.289
43DAP/reference0.855060.206
47DAP/reference0.824680.02
52DAP/reference0.744510.004
57DAP/reference0.531680.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.880680.127
17DAP/reference0.880870.322
27DAP/reference0.879670.069
39DAP/reference0.946720.36
41DAP/reference0.981240.56
42DAP/reference1.297790.4
43DAP/reference1.169210.634
47DAP/reference0.970720.465
52DAP/reference1.151490.888
57DAP/reference1.952210.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.178950.966
26DAP/20DAP0.936341
34DAP/26DAP0.882070.94
51DAP/34DAP0.813190.546
52DAP/51DAP0.948611
53DAP/52DAP1.280810.662
55DAP/53DAP1.127080.989
57DAP/55DAP0.680670.068
62DAP/57DAP1.295540.217
68DAP/62DAP3.080820.017
68DAP/14DAP3.256730.023

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.601650.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato3.58145
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.17525
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.09761
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.84813
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.397990.277
IL2-6/WTpooled0.996281
IL7-5/WTpooled1.47992
IL7-3/WTpooled1.106211
IL12-4/WTpooled1.033581
IL1-4/WTpooled1.46066
WT/WTpooled1.127220.87

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.90067

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973891
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.080971
DC3000/delta hrp 24h0.961440.794

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.69444
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.06371
Exp 36hN/AN/A
Exp 60h0.842710.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.26251
Var 0h1.981670.98
Var 12h I row2-row11.103280.473
Var 12h NI row2-row10.612070.713
Var 36h I row2-row11.275051
Var 36h NI row2-row10.682441
Var 60h I row2-row10.91550.582
Var 60h NI row2-row10.801991
Time course 0hI-0hNI1.052220.852
Time course 12hI-12hNI1.009180.888
Time course 36hI-36hNI1.21950.114
Time course 60hI-60hNI1.338640.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.181510.256
transgenic ySAMdc/azygous control (breaker)0.754140.251
transgenic ySAMdc/azygous control (red)1.054931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.033990.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.097880.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.143680.14
Manapal/WT (break)1.080851
Manapal/WT (red)1.282320.164