Expression of 1-1-1.3.19.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.466060.082
27DAP/17DAP1.356460.872
39DAP/27DAP2.431220.382
41DAP/39DAP0.87450.655
42DAP/41DAP1.230050.933
43DAP/42DAP1.088720.94
47DAP/43DAP1.119680.926
52DAP/47DAP2.037970.315
57DAP/52DAP0.778780.836

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.915860.162
17DAP/reference0.815740.012
27DAP/reference0.942660.327
39DAP/reference1.027940.615
41DAP/reference0.934540.267
42DAP/reference0.940420.129
43DAP/reference0.824010.017
47DAP/reference0.949840.279
52DAP/reference1.051660.498
57DAP/reference1.014691

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108280.619
27DAP/17DAP0.964660.821
39DAP/27DAP1.180010.231
41DAP/39DAP0.988651
42DAP/41DAP0.952640.62
43DAP/42DAP1.027580.554
47DAP/43DAP0.941920.588
52DAP/47DAP0.907740.538
57DAP/52DAP0.84790.216
57DAP/7DAP0.812051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.251750.059
17DAP/reference1.421120.01
27DAP/reference1.332550.009
39DAP/reference1.521770.008
41DAP/reference1.476280.015
42DAP/reference1.366250.024
43DAP/reference1.545850.009
47DAP/reference1.457090.099
52DAP/reference1.341180.013
57DAP/reference1.409770.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980810.72
17DAP/reference1.037510.599
27DAP/reference1.184350.128
39DAP/reference1.176890.29
41DAP/reference1.286870.041
42DAP/reference1.280620.01
43DAP/reference0.994120.706
47DAP/reference1.125630.081
52DAP/reference1.252790.006
57DAP/reference0.915440.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.288340.052
17DAP/reference1.086090.665
27DAP/reference1.588560.017
39DAP/reference1.392420.019
41DAP/reference1.375930.014
42DAP/reference1.359380.017
43DAP/reference1.486040.008
47DAP/reference1.032671
52DAP/reference1.317310.335
57DAP/reference1.684320.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00381
26DAP/20DAP1.071980.753
34DAP/26DAP0.894330.539
51DAP/34DAP0.966850.785
52DAP/51DAP0.995131
53DAP/52DAP1.031630.845
55DAP/53DAP1.032711
57DAP/55DAP1.058311
62DAP/57DAP1.201110.678
68DAP/62DAP1.257650.737
68DAP/14DAP1.34740.024

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.033480.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.190840.113
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.695760.072
Ripe Pepper/Ripe Tomato0.665530.224
Mature Eggplant/Ripe Tomato0.924731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.002591
1-1-2/M821.120361
12-2/M820.914610.955
12-4/M820.83518
1-3/M821.103121
2-1-1/M821.03291
2-1/M820.99766
2-6/M820.955671
3-2/M821.22692
4-1-1/M821.231060.968
4-1/M821.01075
4-3-2/M821.23462
4-3/M821.678561
5-3/M820.918350.49
6-2/M821.361461
6-3/M820.877431
7-1/M821.12412
7-2/M820.976091
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.815860.247
IL2-6/WTpooled1.013561
IL7-5/WTpooled1.037191
IL7-3/WTpooled0.940761
IL12-4/WTpooled1.009191
IL1-4/WTpooled0.924010.834
WT/WTpooled1.05161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.330410.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988151
DC3000/delta hrp 6h1.039451
DC3000/delta hrp 12h0.977011
DC3000/delta hrp 24h1.11030.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.074230.598
DC3000 delta B/DC3000 delta AB1.021511

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.111661
Exp 36h0.978850.749
Exp 60h1.052990.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.963471
Var 0h0.990461
Var 12h I row2-row11.151790.443
Var 12h NI row2-row10.791760.488
Var 36h I row2-row11.0561
Var 36h NI row2-row11.052911
Var 60h I row2-row11.061211
Var 60h NI row2-row11.135540.904
Time course 0hI-0hNI1.112460.603
Time course 12hI-12hNI0.979570.897
Time course 36hI-36hNI1.011081
Time course 60hI-60hNI1.332520.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.059550.36
transgenic ySAMdc/azygous control (breaker)1.054630.248
transgenic ySAMdc/azygous control (red)0.915931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022340.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.188740.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.97281
Manapal/WT (break)1.189140.381
Manapal/WT (red)0.614880.181