Expression of 1-1-1.3.2.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04208 | 0.997 |
27DAP/17DAP | 0.69048 | 0.083 |
39DAP/27DAP | 0.87763 | 0.397 |
41DAP/39DAP | 0.83069 | 0.381 |
42DAP/41DAP | 1.13799 | 0.974 |
43DAP/42DAP | 1.24536 | 0.58 |
47DAP/43DAP | 0.99031 | 0.902 |
52DAP/47DAP | 0.79045 | 0.499 |
57DAP/52DAP | 0.96327 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06762 | 0.611 |
17DAP/reference | 1.21325 | 0.166 |
27DAP/reference | 1.33623 | 0.115 |
39DAP/reference | 1.18844 | 0.286 |
41DAP/reference | 1.19658 | 0.102 |
42DAP/reference | 1.1971 | 0.108 |
43DAP/reference | 1.05934 | 0.838 |
47DAP/reference | 1.17338 | 0.136 |
52DAP/reference | 1.38283 | 0.038 |
57DAP/reference | 1.26639 | 0.122 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9207 | 0.47 |
27DAP/17DAP | 1.03007 | 0.924 |
39DAP/27DAP | 0.60837 | 0.037 |
41DAP/39DAP | 0.81983 | 0.53 |
42DAP/41DAP | 0.90606 | 0.466 |
43DAP/42DAP | 0.88742 | 0.321 |
47DAP/43DAP | 0.99063 | 0.961 |
52DAP/47DAP | 1.13994 | 0.669 |
57DAP/52DAP | 0.99384 | 0.726 |
57DAP/7DAP | 1.04843 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03235 | 1 |
17DAP/reference | 1.3172 | 0.07 |
27DAP/reference | 1.23163 | 0.131 |
39DAP/reference | 1.33488 | 0.021 |
41DAP/reference | 0.97944 | 0.512 |
42DAP/reference | 0.9286 | 0.436 |
43DAP/reference | 0.87927 | 0.305 |
47DAP/reference | 1.33996 | 0.353 |
52DAP/reference | 1.05912 | 1 |
57DAP/reference | 1.05071 | 0.5 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48356 | 0.304 |
17DAP/reference | 1.58289 | 0.083 |
27DAP/reference | 1.06976 | 0.735 |
39DAP/reference | 1.09182 | 0.602 |
41DAP/reference | 1.1252 | 0.981 |
42DAP/reference | 1.19806 | 0.024 |
43DAP/reference | 1.01743 | 0.892 |
47DAP/reference | 1.3829 | 0.008 |
52DAP/reference | 1.2658 | 0.046 |
57DAP/reference | 1.5367 | 0.214 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.65553 | 0.029 |
17DAP/reference | 1.21974 | 0.545 |
27DAP/reference | 1.22773 | 0.34 |
39DAP/reference | 1.48778 | 0.024 |
41DAP/reference | 1.00012 | 0.826 |
42DAP/reference | 1.40694 | 0.029 |
43DAP/reference | 1.11397 | 0.721 |
47DAP/reference | 1.2444 | 0.76 |
52DAP/reference | 1.23903 | 0.601 |
57DAP/reference | 1.21207 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90294 | |
26DAP/20DAP | 1.08862 | 0.806 |
34DAP/26DAP | 1.03526 | 1 |
51DAP/34DAP | 0.89318 | 0.504 |
52DAP/51DAP | 0.94227 | 1 |
53DAP/52DAP | 1.0243 | 0.961 |
55DAP/53DAP | 0.71316 | 0.06 |
57DAP/55DAP | 0.87976 | 0.612 |
62DAP/57DAP | 0.82438 | 0.681 |
68DAP/62DAP | 0.97462 | 0.914 |
68DAP/14DAP | 1.5773 | 0.469 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.37722 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 4.0192 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75857 | 0.243 |
IL2-6/WTpooled | 1.03827 | 1 |
IL7-5/WTpooled | 1.00527 | 1 |
IL7-3/WTpooled | 0.87394 | 0.298 |
IL12-4/WTpooled | 0.8935 | 0.581 |
IL1-4/WTpooled | 0.93518 | 0.834 |
WT/WTpooled | 0.98132 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99027 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08254 | 0.894 |
DC3000/delta hrp 6h | 1.06604 | 1 |
DC3000/delta hrp 12h | 1.0058 | 1 |
DC3000/delta hrp 24h | 0.81502 | 0.202 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.50968 | 0.027 |
DC3000 delta B/DC3000 delta AB | 0.60606 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.74812 | 0.328 |
Exp 36h | 0.72681 | 0.419 |
Exp 60h | 0.76171 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0395 | 1 |
Var 0h | 0.94984 | 1 |
Var 12h I row2-row1 | 0.76986 | 0.357 |
Var 12h NI row2-row1 | 0.98626 | 0.906 |
Var 36h I row2-row1 | 1.13049 | 1 |
Var 36h NI row2-row1 | 0.85752 | 0.743 |
Var 60h I row2-row1 | 1.05458 | 0.562 |
Var 60h NI row2-row1 | 1.12284 | 1 |
Time course 0hI-0hNI | 0.99143 | 1 |
Time course 12hI-12hNI | 0.97799 | 0.882 |
Time course 36hI-36hNI | 0.81069 | 0.062 |
Time course 60hI-60hNI | 0.12009 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1898 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 1.38236 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.3302 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8793 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.41754 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.72734 | 0.083 |
Manapal/WT (break) | 3.39964 | 0.123 |
Manapal/WT (red) | N/A | N/A |
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