Expression of 1-1-1.3.2.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0261 | 0.938 |
27DAP/17DAP | 0.97333 | 0.978 |
39DAP/27DAP | 1.77631 | 0.08 |
41DAP/39DAP | 0.61766 | 0.058 |
42DAP/41DAP | 0.79484 | 0.774 |
43DAP/42DAP | 0.87253 | 0.788 |
47DAP/43DAP | 0.92482 | 0.696 |
52DAP/47DAP | 0.92327 | 0.724 |
57DAP/52DAP | 1.28783 | 0.89 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94136 | 0.231 |
17DAP/reference | 0.92156 | 0.104 |
27DAP/reference | 1.13489 | 0.348 |
39DAP/reference | 0.95421 | 0.324 |
41DAP/reference | 1.00398 | 1 |
42DAP/reference | 0.97869 | 0.305 |
43DAP/reference | 0.90448 | 0.394 |
47DAP/reference | 1.0541 | 0.674 |
52DAP/reference | 1.29896 | 0.205 |
57DAP/reference | 1.18653 | 0.27 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06365 | 0.581 |
27DAP/17DAP | 0.84434 | 0.648 |
39DAP/27DAP | 0.89321 | 0.622 |
41DAP/39DAP | 0.97366 | 0.973 |
42DAP/41DAP | 1.07963 | 0.893 |
43DAP/42DAP | 0.96778 | 0.751 |
47DAP/43DAP | 1.1851 | 0.492 |
52DAP/47DAP | 1.22865 | 0.568 |
57DAP/52DAP | 0.89251 | 0.221 |
57DAP/7DAP | 0.71068 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83456 | 0.168 |
17DAP/reference | 0.90781 | 0.295 |
27DAP/reference | 0.96582 | 0.43 |
39DAP/reference | 0.97738 | 0.474 |
41DAP/reference | 1.02325 | 1 |
42DAP/reference | 0.81181 | 0.07 |
43DAP/reference | 0.89144 | 0.21 |
47DAP/reference | 0.96935 | 0.671 |
52DAP/reference | 0.96637 | 0.477 |
57DAP/reference | 0.97543 | 0.513 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90771 | 0.457 |
17DAP/reference | 0.69116 | 0.214 |
27DAP/reference | 0.81905 | 0.203 |
39DAP/reference | 0.96015 | 0.381 |
41DAP/reference | 0.96151 | 0.459 |
42DAP/reference | 1.11731 | 0.288 |
43DAP/reference | 0.75703 | 0.111 |
47DAP/reference | 0.93059 | 0.253 |
52DAP/reference | 0.87737 | 0.131 |
57DAP/reference | 0.88369 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.934 | 0.214 |
17DAP/reference | 1.3224 | 0.467 |
27DAP/reference | 0.58059 | 0.058 |
39DAP/reference | 1.10108 | 0.792 |
41DAP/reference | 0.90826 | 0.331 |
42DAP/reference | 0.9187 | 0.445 |
43DAP/reference | 1.13684 | 0.744 |
47DAP/reference | 0.99615 | 0.667 |
52DAP/reference | 0.74734 | 0.114 |
57DAP/reference | 1.22602 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.82347 | 0.966 |
26DAP/20DAP | 1.06163 | 0.974 |
34DAP/26DAP | 0.9057 | 0.653 |
51DAP/34DAP | 1.32881 | 0.416 |
52DAP/51DAP | 0.85467 | 0.151 |
53DAP/52DAP | 0.98525 | 0.924 |
55DAP/53DAP | 1.08126 | 0.955 |
57DAP/55DAP | 0.96317 | 0.821 |
62DAP/57DAP | 0.90927 | 0.994 |
68DAP/62DAP | 1.62933 | 0.398 |
68DAP/14DAP | 1.80624 | 0.113 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12333 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 4.0277 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.34821 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 3.31443 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.06608 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97781 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.84378 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.30713 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.04601 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.81103 | |
9-3-2/M82 | 1.34507 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98689 | 1 |
IL2-6/WTpooled | 1.01772 | 1 |
IL7-5/WTpooled | 0.95639 | 1 |
IL7-3/WTpooled | 1.01928 | 1 |
IL12-4/WTpooled | 1.07417 | 0.891 |
IL1-4/WTpooled | 0.95635 | 1 |
WT/WTpooled | 1.02824 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.27687 | 0.154 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00073 | 1 |
DC3000/delta hrp 6h | 1.04418 | 0.95 |
DC3000/delta hrp 12h | 1.04783 | 1 |
DC3000/delta hrp 24h | 1.72109 | 0.054 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99058 | 1 |
DC3000 delta B/DC3000 delta AB | 1.07361 | 0.761 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99987 | 1 |
Exp 36h | 0.63178 | 0.41 |
Exp 60h | 0.75471 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.048 | 1 |
Var 0h | 0.77533 | 0.457 |
Var 12h I row2-row1 | 0.90402 | 0.514 |
Var 12h NI row2-row1 | 1.06811 | 1 |
Var 36h I row2-row1 | 1.52241 | 0.742 |
Var 36h NI row2-row1 | 0.88437 | 0.743 |
Var 60h I row2-row1 | 0.81555 | 0.439 |
Var 60h NI row2-row1 | 0.95991 | 1 |
Time course 0hI-0hNI | 1.01324 | 1 |
Time course 12hI-12hNI | 0.85116 | 0.247 |
Time course 36hI-36hNI | 0.75699 | 0.028 |
Time course 60hI-60hNI | 0.60358 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09207 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.47058 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.97865 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93266 | 0.295 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.81381 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.30856 | 0.14 |
Manapal/WT (break) | 1.0305 | 1 |
Manapal/WT (red) | N/A | N/A |
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