Expression of 1-1-1.3.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02610.938
27DAP/17DAP0.973330.978
39DAP/27DAP1.776310.08
41DAP/39DAP0.617660.058
42DAP/41DAP0.794840.774
43DAP/42DAP0.872530.788
47DAP/43DAP0.924820.696
52DAP/47DAP0.923270.724
57DAP/52DAP1.287830.89

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.941360.231
17DAP/reference0.921560.104
27DAP/reference1.134890.348
39DAP/reference0.954210.324
41DAP/reference1.003981
42DAP/reference0.978690.305
43DAP/reference0.904480.394
47DAP/reference1.05410.674
52DAP/reference1.298960.205
57DAP/reference1.186530.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.063650.581
27DAP/17DAP0.844340.648
39DAP/27DAP0.893210.622
41DAP/39DAP0.973660.973
42DAP/41DAP1.079630.893
43DAP/42DAP0.967780.751
47DAP/43DAP1.18510.492
52DAP/47DAP1.228650.568
57DAP/52DAP0.892510.221
57DAP/7DAP0.710681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834560.168
17DAP/reference0.907810.295
27DAP/reference0.965820.43
39DAP/reference0.977380.474
41DAP/reference1.023251
42DAP/reference0.811810.07
43DAP/reference0.891440.21
47DAP/reference0.969350.671
52DAP/reference0.966370.477
57DAP/reference0.975430.513

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.907710.457
17DAP/reference0.691160.214
27DAP/reference0.819050.203
39DAP/reference0.960150.381
41DAP/reference0.961510.459
42DAP/reference1.117310.288
43DAP/reference0.757030.111
47DAP/reference0.930590.253
52DAP/reference0.877370.131
57DAP/reference0.883690.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9340.214
17DAP/reference1.32240.467
27DAP/reference0.580590.058
39DAP/reference1.101080.792
41DAP/reference0.908260.331
42DAP/reference0.91870.445
43DAP/reference1.136840.744
47DAP/reference0.996150.667
52DAP/reference0.747340.114
57DAP/reference1.226020.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.823470.966
26DAP/20DAP1.061630.974
34DAP/26DAP0.90570.653
51DAP/34DAP1.328810.416
52DAP/51DAP0.854670.151
53DAP/52DAP0.985250.924
55DAP/53DAP1.081260.955
57DAP/55DAP0.963170.821
62DAP/57DAP0.909270.994
68DAP/62DAP1.629330.398
68DAP/14DAP1.806240.113

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.123330.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato4.02770.015
Immature Eggplant/Mature Eggplant1.34821
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato3.31443

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.06608
12-2/M82N/AN/A
12-4/M820.97781
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.84378
4-1-1/M82N/AN/A
4-1/M821.30713
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.046011
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.81103
9-3-2/M821.345071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.986891
IL2-6/WTpooled1.017721
IL7-5/WTpooled0.956391
IL7-3/WTpooled1.019281
IL12-4/WTpooled1.074170.891
IL1-4/WTpooled0.956351
WT/WTpooled1.028241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.276870.154

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000731
DC3000/delta hrp 6h1.044180.95
DC3000/delta hrp 12h1.047831
DC3000/delta hrp 24h1.721090.054

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.990581
DC3000 delta B/DC3000 delta AB1.073610.761

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.999871
Exp 36h0.631780.41
Exp 60h0.754710.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0481
Var 0h0.775330.457
Var 12h I row2-row10.904020.514
Var 12h NI row2-row11.068111
Var 36h I row2-row11.522410.742
Var 36h NI row2-row10.884370.743
Var 60h I row2-row10.815550.439
Var 60h NI row2-row10.959911
Time course 0hI-0hNI1.013241
Time course 12hI-12hNI0.851160.247
Time course 36hI-36hNI0.756990.028
Time course 60hI-60hNI0.603580.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.092070.798
transgenic ySAMdc/azygous control (breaker)1.470580.178
transgenic ySAMdc/azygous control (red)0.978651

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.932660.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.813810.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.308560.14
Manapal/WT (break)1.03051
Manapal/WT (red)N/AN/A